[gentoo-amd64] glibc update problem

[Rupert Young (Restart)]

Hi,

 

Our server is getting stuck on updating packages. We can not seem to get
past the upgrade to glibc. Sometimes it fails, with an error, and sometimes
it actually kills the machine requiring reboot, examples of both below.
Sorry if this is a known problem, but I've been looking and struggling with
it for a couple of weeks. Any help would be appreciated, here's the info
from emerge, 

 

emerge --info

 

 

Gentoo Base System version 1.6.14

Portage 2.0.54 (default-linux/x86/2006.0, gcc-3.4.4, glibc-2.3.5-r1,
2.6.7-gentoo-r14 x86_64)

=================================================================

System uname: 2.6.7-gentoo-r14 x86_64 AMD Opteron(tm) Processor 250

dev-lang/python:     2.3.5-r2, 2.4.2

sys-apps/sandbox:    1.2.12

sys-devel/autoconf:  2.13, 2.59-r6

sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1

sys-devel/binutils:  2.16.1

sys-devel/libtool:   1.5.22

virtual/os-headers:  2.6.11-r2

ACCEPT_KEYWORDS="x86"

AUTOCLEAN="yes"

CBUILD="x86_64-pc-linux-gnu"

CFLAGS="-mtune=opteron -march=opteron -O3 -funroll-loops
-fomit-frame-pointer -fprefetch-loop-arrays -pipe -ftracer -mmmx -msse
-msse2 -m3dnow -mfpmath=sse"

CHOST="x86_64-pc-linux-gnu"

CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config
/usr/lib/X11/xkb /usr/lib64/mozilla/defaults/pref /usr/share/config
/usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/
/usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/
/usr/share/texmf/xdvi/ /var/qmail/control"

CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"

CXXFLAGS="-mtune=opteron -march=opteron -O3 -funroll-loops
-fomit-frame-pointer -fprefetch-loop-arrays -pipe -ftracer -mmmx -msse
-msse2 -m3dnow -mfpmath=sse"

DISTDIR="/usr/portage/distfiles"

FEATURES="autoconfig distlocks sandbox sfperms strict"

GENTOO_MIRRORS="http://distfiles.gentoo.org
http://distro.ibiblio.org/pub/linux/distributions/gentoo"

MAKEOPTS="-j4"

PKGDIR="/usr/portage/packages"

PORTAGE_TMPDIR="/var/tmp"

PORTDIR="/usr/portage"

PORTDIR_OVERLAY="/usr/local/portage"

SYNC="rsync://rsync.gentoo.org/gentoo-portage"

USE="x86 3dnow X acpi alsa apache2 audiofile avi bitmap-fonts bzip2 crypt
cups dga eds emboss encode exif expat fam fbcon foomaticdb fortran gd gdbm
gif glut gpm gstreamer gtk gtk2 imagemagick imlib ipv6 java jikes jpeg junit
lcms libg++ libwww mad mailwrapper mhash mikmod mmx mng mozilla mp3 mpeg
mysql ncurses nptl ogg oggvorbis opengl pam pcre pdflib png python quicktime
readline samba sdl slang spell sse ssl tcpd tetex tiff truetype
truetype-fonts type1-fonts udev userlocales vorbis xml xml2 xmms xv zlib
userland_GNU kernel_linux elibc_glibc"

Unset:  ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS

 

 

The error from dying machine is,

 

CPU 0: Machine check Exception 4 Bank 0: f60c200000000136

TSC 177daa0cc8aof ADDR 1af80e80

Kernal panic: Machine check

 

The error msg from (non-dying)

Emerge -av sys-lib/glic

 

x86_64-pc-linux-gnu-gcc iso_2033.c -c -std=gnu99 -O2 -Wall -Winline
-Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron -pipe
-fPIC    -I../include -I.
-I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
uxthreads/iconvdata -I.. -I../libio
-I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
uxthreads -I../sysdeps/x86_64/elf
-I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
-I../linuxthreads/sysdeps/unix/sysv/linux -I../linuxthreads/sysdeps/pthread
-I../sysdeps/pthread -I../linuxthreads/sysdeps/unix/sysv
-I../linuxthreads/sysdeps/unix -I../linuxthreads/sysdeps/x86_64
-I../libidn/sysdeps/unix -I../sysdeps/unix/sysv/linux/x86_64
-I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
-I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
-I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
-I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
-I../sysdeps/x86_64 -I../sysdeps/wordsize-64 -I../sysdeps/ieee754/ldbl-96
-I../sysdeps/ieee754/dbl-64 -I../sysdeps/ieee754/flt-32 -I../sysdeps/ieee754
-I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
-D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
-DNOT_IN_libc -o
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_2033.os -MD -MP -MF
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_2033.os.dt -MT
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_2033.os

../iconv/skeleton.c: In function `gconv_init':

../iconv/skeleton.c:350: internal compiler error: in expand_stmt, at
c-semantics.c:883

Please submit a full bug report,

with preprocessed source if appropriate.

See <URL:http://bugs.gentoo.org/> for instructions.

x86_64-pc-linux-gnu-gcc iso_5427.c -c -std=gnu99 -O2 -Wall -Winline
-Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron -pipe
-fPIC    -I../include -I.
-I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
uxthreads/iconvdata -I.. -I../libio
-I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
uxthreads -I../sysdeps/x86_64/elf
-I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
-I../linuxthreads/sysdeps/unix/sysv/linux -I../linuxthreads/sysdeps/pthread
-I../sysdeps/pthread -I../linuxthreads/sysdeps/unix/sysv
-I../linuxthreads/sysdeps/unix -I../linuxthreads/sysdeps/x86_64
-I../libidn/sysdeps/unix -I../sysdeps/unix/sysv/linux/x86_64
-I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
-I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
-I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
-I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
-I../sysdeps/x86_64 -I../sysdeps/wordsize-64 -I../sysdeps/ieee754/ldbl-96
-I../sysdeps/ieee754/dbl-64 -I../sysdeps/ieee754/flt-32 -I../sysdeps/ieee754
-I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
-D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
-DNOT_IN_libc -o
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_5427.os -MD -MP -MF
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_5427.os.dt -MT
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_5427.os

x86_64-pc-linux-gnu-gcc iso_5427-ext.c -c -std=gnu99 -O2 -Wall -Winline
-Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron -pipe
-fPIC    -I../include -I.
-I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
uxthreads/iconvdata -I.. -I../libio
-I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
uxthreads -I../sysdeps/x86_64/elf
-I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
-I../linuxthreads/sysdeps/unix/sysv/linux -I../linuxthreads/sysdeps/pthread
-I../sysdeps/pthread -I../linuxthreads/sysdeps/unix/sysv
-I../linuxthreads/sysdeps/unix -I../linuxthreads/sysdeps/x86_64
-I../libidn/sysdeps/unix -I../sysdeps/unix/sysv/linux/x86_64
-I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
-I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
-I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
-I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
-I../sysdeps/x86_64 -I../sysdeps/wordsize-64 -I../sysdeps/ieee754/ldbl-96
-I../sysdeps/ieee754/dbl-64 -I../sysdeps/ieee754/flt-32 -I../sysdeps/ieee754

-I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
-D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
-DNOT_IN_libc -o
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_5427-ext.os -MD -MP -MF
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_5427-ext.os.dt -MT
/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linux
threads/iconvdata/iso_5427-ext.os

The bug is not reproducible, so it is likely a hardware or OS problem.

make[2]: ***
[/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
xthreads/iconvdata/iso_6937-2.os] Error 1

make[2]: *** Waiting for unfinished jobs....

make[2]: Leaving directory
`/var/tmp/portage/glibc-2.3.5-r2/work/glibc-2.3.5/iconvdata'

make[1]: *** [iconvdata/others] Error 2

make[1]: Leaving directory
`/var/tmp/portage/glibc-2.3.5-r2/work/glibc-2.3.5'

make: *** [all] Error 2

 

!!! ERROR: sys-libs/glibc-2.3.5-r2 failed.

!!! Function toolchain-glibc_src_compile, Line 226, Exitcode 2

!!! (no error message)

!!! If you need support, post the topmost build error, NOT this status
message.

 

 

 

Any help appreciated.