Re: [gentoo-amd64] glibc update problem

On Tuesday 28 February 2006 23:57, Rupert Young (Restart) wrote:
> Hi,
>
>
>
> Our server is getting stuck on updating packages. We can not seem to get
> past the upgrade to glibc. Sometimes it fails, with an error, and sometimes
> it actually kills the machine requiring reboot, examples of both below.
> Sorry if this is a known problem, but I've been looking and struggling with
> it for a couple of weeks. Any help would be appreciated, here's the info
> from emerge,
>
>
>
> emerge --info
>
>
>
>
>
> Gentoo Base System version 1.6.14
>
> Portage 2.0.54 (default-linux/x86/2006.0, gcc-3.4.4, glibc-2.3.5-r1,
> 2.6.7-gentoo-r14 x86_64)
>
> =================================================================
>
> System uname: 2.6.7-gentoo-r14 x86_64 AMD Opteron(tm) Processor 250
>
> dev-lang/python:     2.3.5-r2, 2.4.2
>
> sys-apps/sandbox:    1.2.12
>
> sys-devel/autoconf:  2.13, 2.59-r6
>
> sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1
>
> sys-devel/binutils:  2.16.1
>
> sys-devel/libtool:   1.5.22
>
> virtual/os-headers:  2.6.11-r2
>
> ACCEPT_KEYWORDS="x86"
>
> AUTOCLEAN="yes"
>
> CBUILD="x86_64-pc-linux-gnu"
>
> CFLAGS="-mtune=opteron -march=opteron -O3 -funroll-loops
> -fomit-frame-pointer -fprefetch-loop-arrays -pipe -ftracer -mmmx -msse
> -msse2 -m3dnow -mfpmath=sse"

-march=opteron -O2 -ftracer -pipe

amd even that could be too much.
Some of your flags are pointless (-mmmx, -msse. mfpmath=, fomit-frame-pointer)

Some may be even dangerous (-O3, -fprefetsch-loop-arrays).

>
> CHOST="x86_64-pc-linux-gnu"
>
> CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config
> /usr/lib/X11/xkb /usr/lib64/mozilla/defaults/pref /usr/share/config
> /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/
> /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/
> /usr/share/texmf/xdvi/ /var/qmail/control"
>
> CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"
>
> CXXFLAGS="-mtune=opteron -march=opteron -O3 -funroll-loops
> -fomit-frame-pointer -fprefetch-loop-arrays -pipe -ftracer -mmmx -msse
> -msse2 -m3dnow -mfpmath=sse"
>
> DISTDIR="/usr/portage/distfiles"
>
> FEATURES="autoconfig distlocks sandbox sfperms strict"
>
> GENTOO_MIRRORS="http://distfiles.gentoo.org
> http://distro.ibiblio.org/pub/linux/distributions/gentoo"
>
> MAKEOPTS="-j4"
>
> PKGDIR="/usr/portage/packages"
>
> PORTAGE_TMPDIR="/var/tmp"
>
> PORTDIR="/usr/portage"
>
> PORTDIR_OVERLAY="/usr/local/portage"
>
> SYNC="rsync://rsync.gentoo.org/gentoo-portage"
>
> USE="x86 3dnow X acpi alsa apache2 audiofile avi bitmap-fonts bzip2 crypt
> cups dga eds emboss encode exif expat fam fbcon foomaticdb fortran gd gdbm
> gif glut gpm gstreamer gtk gtk2 imagemagick imlib ipv6 java jikes jpeg
> junit lcms libg++ libwww mad mailwrapper mhash mikmod mmx mng mozilla mp3
> mpeg mysql ncurses nptl ogg oggvorbis opengl pam pcre pdflib png python
> quicktime readline samba sdl slang spell sse ssl tcpd tetex tiff truetype
> truetype-fonts type1-fonts udev userlocales vorbis xml xml2 xmms xv zlib
> userland_GNU kernel_linux elibc_glibc"
>
> Unset:  ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS
>
>
>
>
>
> The error from dying machine is,
>
>
>
> CPU 0: Machine check Exception 4 Bank 0: f60c200000000136
>
> TSC 177daa0cc8aof ADDR 1af80e80
>
> Kernal panic: Machine check
>
>
>
> The error msg from (non-dying)
>
> Emerge -av sys-lib/glic
>
>
>
> x86_64-pc-linux-gnu-gcc iso_2033.c -c -std=gnu99 -O2 -Wall -Winline
> -Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron -pipe
> -fPIC    -I../include -I.
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-li
>n uxthreads/iconvdata -I.. -I../libio
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-li
>n uxthreads -I../sysdeps/x86_64/elf
> -I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
> -I../linuxthreads/sysdeps/unix/sysv/linux -I../linuxthreads/sysdeps/pthread
> -I../sysdeps/pthread -I../linuxthreads/sysdeps/unix/sysv
> -I../linuxthreads/sysdeps/unix -I../linuxthreads/sysdeps/x86_64
> -I../libidn/sysdeps/unix -I../sysdeps/unix/sysv/linux/x86_64
> -I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
> -I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
> -I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
> -I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
> -I../sysdeps/x86_64 -I../sysdeps/wordsize-64 -I../sysdeps/ieee754/ldbl-96
> -I../sysdeps/ieee754/dbl-64 -I../sysdeps/ieee754/flt-32
> -I../sysdeps/ieee754 -I../sysdeps/generic/elf -I../sysdeps/generic
> -nostdinc -isystem
> /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
> -D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
> -DNOT_IN_libc -o
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_2033.os -MD -MP -MF
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_2033.os.dt -MT
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_2033.os
>
> ../iconv/skeleton.c: In function `gconv_init':
>
> ../iconv/skeleton.c:350: internal compiler error: in expand_stmt, at
> c-semantics.c:883
>
> Please submit a full bug report,
>
> with preprocessed source if appropriate.
>
> See <URL:http://bugs.gentoo.org/> for instructions.
>
> x86_64-pc-linux-gnu-gcc iso_5427.c -c -std=gnu99 -O2 -Wall -Winline
> -Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron -pipe
> -fPIC    -I../include -I.
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-li
>n uxthreads/iconvdata -I.. -I../libio
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-li
>n uxthreads -I../sysdeps/x86_64/elf
> -I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
> -I../linuxthreads/sysdeps/unix/sysv/linux -I../linuxthreads/sysdeps/pthread
> -I../sysdeps/pthread -I../linuxthreads/sysdeps/unix/sysv
> -I../linuxthreads/sysdeps/unix -I../linuxthreads/sysdeps/x86_64
> -I../libidn/sysdeps/unix -I../sysdeps/unix/sysv/linux/x86_64
> -I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
> -I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
> -I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
> -I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
> -I../sysdeps/x86_64 -I../sysdeps/wordsize-64 -I../sysdeps/ieee754/ldbl-96
> -I../sysdeps/ieee754/dbl-64 -I../sysdeps/ieee754/flt-32
> -I../sysdeps/ieee754 -I../sysdeps/generic/elf -I../sysdeps/generic
> -nostdinc -isystem
> /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
> -D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
> -DNOT_IN_libc -o
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_5427.os -MD -MP -MF
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_5427.os.dt -MT
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_5427.os
>
> x86_64-pc-linux-gnu-gcc iso_5427-ext.c -c -std=gnu99 -O2 -Wall -Winline
> -Wstrict-prototypes -Wwrite-strings -march=opteron -mtune=opteron -pipe
> -fPIC    -I../include -I.
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-li
>n uxthreads/iconvdata -I.. -I../libio
> -I/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-li
>n uxthreads -I../sysdeps/x86_64/elf
> -I../linuxthreads/sysdeps/unix/sysv/linux/x86_64
> -I../linuxthreads/sysdeps/unix/sysv/linux -I../linuxthreads/sysdeps/pthread
> -I../sysdeps/pthread -I../linuxthreads/sysdeps/unix/sysv
> -I../linuxthreads/sysdeps/unix -I../linuxthreads/sysdeps/x86_64
> -I../libidn/sysdeps/unix -I../sysdeps/unix/sysv/linux/x86_64
> -I../sysdeps/unix/sysv/linux/wordsize-64 -I../sysdeps/unix/sysv/linux
> -I../sysdeps/gnu -I../sysdeps/unix/common -I../sysdeps/unix/mman
> -I../sysdeps/unix/inet -I../sysdeps/unix/sysv -I../sysdeps/unix/x86_64
> -I../sysdeps/unix -I../sysdeps/posix -I../sysdeps/x86_64/fpu
> -I../sysdeps/x86_64 -I../sysdeps/wordsize-64 -I../sysdeps/ieee754/ldbl-96
> -I../sysdeps/ieee754/dbl-64 -I../sysdeps/ieee754/flt-32
> -I../sysdeps/ieee754
>
> -I../sysdeps/generic/elf -I../sysdeps/generic -nostdinc -isystem
> /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/include -isystem /usr/include
> -D_LIBC_REENTRANT -include ../include/libc-symbols.h  -DPIC -DSHARED
> -DNOT_IN_libc -o
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_5427-ext.os -MD -MP -MF
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_5427-ext.os.dt -MT
> /var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-linu
>x threads/iconvdata/iso_5427-ext.os
>
> The bug is not reproducible, so it is likely a hardware or OS problem.
>
> make[2]: ***
> [/var/tmp/portage/glibc-2.3.5-r2/work/build-default-x86_64-pc-linux-gnu-lin
>u xthreads/iconvdata/iso_6937-2.os] Error 1
>
> make[2]: *** Waiting for unfinished jobs....
>
> make[2]: Leaving directory
> `/var/tmp/portage/glibc-2.3.5-r2/work/glibc-2.3.5/iconvdata'
>
> make[1]: *** [iconvdata/others] Error 2
>
> make[1]: Leaving directory
> `/var/tmp/portage/glibc-2.3.5-r2/work/glibc-2.3.5'
>
> make: *** [all] Error 2
>
>

if you are sure, that your ram is good and your cpu's not overheating, try a 
bigger/better PSU.
-- 
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