1 |
jlec 12/06/23 18:57:05 |
2 |
|
3 |
Modified: ChangeLog |
4 |
Added: pdb-extract-3.11.ebuild |
5 |
Log: |
6 |
sci-chemistry/pdb-extract: Version Bump, #379159 |
7 |
|
8 |
(Portage version: 2.2.0_alpha111/cvs/Linux x86_64) |
9 |
|
10 |
Revision Changes Path |
11 |
1.21 sci-chemistry/pdb-extract/ChangeLog |
12 |
|
13 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog?rev=1.21&view=markup |
14 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog?rev=1.21&content-type=text/plain |
15 |
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog?r1=1.20&r2=1.21 |
16 |
|
17 |
Index: ChangeLog |
18 |
=================================================================== |
19 |
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v |
20 |
retrieving revision 1.20 |
21 |
retrieving revision 1.21 |
22 |
diff -u -r1.20 -r1.21 |
23 |
--- ChangeLog 24 Apr 2012 06:55:49 -0000 1.20 |
24 |
+++ ChangeLog 23 Jun 2012 18:57:05 -0000 1.21 |
25 |
@@ -1,6 +1,13 @@ |
26 |
# ChangeLog for sci-chemistry/pdb-extract |
27 |
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
28 |
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.20 2012/04/24 06:55:49 jlec Exp $ |
29 |
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.21 2012/06/23 18:57:05 jlec Exp $ |
30 |
+ |
31 |
+*pdb-extract-3.11 (23 Jun 2012) |
32 |
+ |
33 |
+ 23 Jun 2012; Justin Lecher <jlec@g.o> +pdb-extract-3.11.ebuild, |
34 |
+ +files/pdb-extract-3.11-cflags-install.patch, |
35 |
+ +files/pdb-extract-3.11-gcc-4.7.patch: |
36 |
+ Version Bump, #379159 |
37 |
|
38 |
24 Apr 2012; Justin Lecher <jlec@g.o> |
39 |
-files/respect-cflags-and-fix-install.patch: |
40 |
|
41 |
|
42 |
|
43 |
1.1 sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild |
44 |
|
45 |
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild?rev=1.1&view=markup |
46 |
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild?rev=1.1&content-type=text/plain |
47 |
|
48 |
Index: pdb-extract-3.11.ebuild |
49 |
=================================================================== |
50 |
# Copyright 1999-2012 Gentoo Foundation |
51 |
# Distributed under the terms of the GNU General Public License v2 |
52 |
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild,v 1.1 2012/06/23 18:57:05 jlec Exp $ |
53 |
|
54 |
EAPI=4 |
55 |
|
56 |
inherit eutils toolchain-funcs multilib prefix |
57 |
|
58 |
MY_P="${PN}-v${PV}-prod-src" |
59 |
|
60 |
DESCRIPTION="Tools for extracting mmCIF data from structure determination applications" |
61 |
HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html" |
62 |
SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz" |
63 |
|
64 |
LICENSE="PDB" |
65 |
SLOT="0" |
66 |
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
67 |
IUSE="" |
68 |
|
69 |
RDEPEND="!<app-text/html-xml-utils-5.3" |
70 |
DEPEND="${RDEPEND} |
71 |
>=sci-libs/cifparse-obj-7.025" |
72 |
|
73 |
S="${WORKDIR}/${MY_P}" |
74 |
|
75 |
MAKEOPTS+=" -j1" |
76 |
|
77 |
src_prepare() { |
78 |
epatch \ |
79 |
"${FILESDIR}"/${P}-cflags-install.patch \ |
80 |
"${FILESDIR}"/${P}-gcc-4.7.patch \ |
81 |
"${FILESDIR}"/${PN}-3.004-env.patch |
82 |
|
83 |
sed -i \ |
84 |
-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \ |
85 |
-e "s:^\(CC=\).*:\1$(tc-getCC):g" \ |
86 |
-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \ |
87 |
-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \ |
88 |
"${S}"/etc/make.* \ |
89 |
|| die "Failed to fix makefiles" |
90 |
|
91 |
eprefixify pdb-extract-v3.0/Makefile etc/* |
92 |
} |
93 |
|
94 |
src_install() { |
95 |
exeinto /usr/libexec/ccp4/bin |
96 |
doexe bin/pdb_extract{,_sf} bin/extract |
97 |
insinto /usr/include/rcsb |
98 |
doins include/* |
99 |
dodoc README* |
100 |
insinto /usr/share/rcsb/ |
101 |
doins -r pdb-extract-data |
102 |
|
103 |
cat >> "${T}"/envd <<- EOF |
104 |
PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/" |
105 |
PDB_EXTRACT_ROOT="${EPREFIX}/usr/" |
106 |
EOF |
107 |
|
108 |
newenvd "${T}"/envd 20pdb-extract |
109 |
} |