[gentoo-commits] proj/sci:master commit in: sci-biology/minced/

[Martin Mokrejs]

commit:     ada126f6eddf67c7a11945c947246b5e22be20b4
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Apr 27 11:11:33 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Apr 27 11:11:33 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ada126f6

sci-biology/minced: new package; the /usr/bin/minced wrapper for the minced.jar does not work

Package-Manager: portage-2.2.18

 sci-biology/minced/ChangeLog          | 10 ++++++++++
 sci-biology/minced/metadata.xml       |  9 +++++++++
 sci-biology/minced/minced-9999.ebuild | 29 +++++++++++++++++++++++++++++
 3 files changed, 48 insertions(+)

diff --git a/sci-biology/minced/ChangeLog b/sci-biology/minced/ChangeLog
new file mode 100644
index 0000000..7b11290
--- /dev/null
+++ b/sci-biology/minced/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/minced
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*minced-9999 (27 Apr 2015)
+
+  27 Apr 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +metadata.xml,
+  +minced-9999.ebuild:
+  sci-biology/minced: new package; the /usr/bin/minced wrapper for the
+  minced.jar does not work

diff --git a/sci-biology/minced/metadata.xml b/sci-biology/minced/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/minced/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/minced/minced-9999.ebuild b/sci-biology/minced/minced-9999.ebuild
new file mode 100644
index 0000000..04ec64a
--- /dev/null
+++ b/sci-biology/minced/minced-9999.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit git-r3 java-pkg-2
+
+DESCRIPTION="Short Palindromic Repeat finder tool (for CRISPRs)"
+HOMEPAGE="https://github.com/ctSkennerton/minced/tree/master"
+EGIT_REPO_URI="https://github.com/ctSkennerton/minced.git"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=">=virtual/jdk-1.7"
+RDEPEND=">=virtual/jre-1.7"
+
+src_compile(){
+	emake
+}
+
+src_install(){
+	java-pkg_newjar minced.jar
+	java-pkg_dolauncher minced --jar minced.jar # --main minced.minced
+	dodoc README
+}