[gentoo-commits] proj/sci:master commit in: sci-biology/karect/

[Martin Mokrejs]

commit:     b4e77f4cf03a055b7af8a2566bc1252590da2662
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 31 21:57:29 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 31 21:57:29 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4e77f4c

sci-biology/karect: new package

Package-Manager: portage-2.2.28

 sci-biology/karect/karect-1.0.0.ebuild | 33 +++++++++++++++++++++++++++++++++
 sci-biology/karect/metadata.xml        | 12 ++++++++++++
 2 files changed, 45 insertions(+)

diff --git a/sci-biology/karect/karect-1.0.0.ebuild b/sci-biology/karect/karect-1.0.0.ebuild
new file mode 100644
index 0000000..9189910
--- /dev/null
+++ b/sci-biology/karect/karect-1.0.0.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit toolchain-funcs
+
+DESCRIPTION="Correct mismatches and indels of raw reads incl. paired-end"
+HOMEPAGE="https://github.com/aminallam/karect
+	http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract"
+SRC_URI="https://codeload.github.com/aminallam/karect/legacy.tar.gz/master -> karect-1.0.0.tar.gz"
+# actually fetches aminallam-karect-v1.0-0-gba3ad54.tar.gz
+# https://github.com/aminallam/karect.git
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/aminallam-karect-ba3ad54/
+
+src_compile(){
+	$(tc-getCXX) ${CXXFLAGS} -pthread -lpthread karect.cpp -o karect || die
+}
+
+src_install(){
+	dobin karect
+	dodoc karect_manual.pdf README README.md
+}

diff --git a/sci-biology/karect/metadata.xml b/sci-biology/karect/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/karect/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@g.o</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>