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commit: 74bc48aaac3968150d9dbcc52877289811171493 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sat May 2 16:12:45 2015 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sat May 2 16:12:45 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=74bc48aa |
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added PYTHON_USEDEP |
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Package-Manager: portage-2.2.18 |
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sci-biology/tophat/ChangeLog | 4 ++++ |
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sci-biology/tophat/tophat-2.0.12.ebuild | 4 ++-- |
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sci-biology/tophat/tophat-2.0.13.ebuild | 4 ++-- |
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sci-biology/tophat/tophat-2.0.14.ebuild | 4 ++-- |
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4 files changed, 10 insertions(+), 6 deletions(-) |
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diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog |
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index 62520a2..84e8313 100644 |
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--- a/sci-biology/tophat/ChangeLog |
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+++ b/sci-biology/tophat/ChangeLog |
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@@ -2,6 +2,10 @@ |
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.14 2015/04/07 14:35:24 jlec Exp $ |
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+ 02 May 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ tophat-2.0.12.ebuild, tophat-2.0.13.ebuild, tophat-2.0.14.ebuild: |
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+ added PYTHON_USEDEP |
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+ |
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28 Apr 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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tophat-2.0.12.ebuild, tophat-2.0.13.ebuild, tophat-2.0.14.ebuild: |
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sci-biology/tophat: recorded depependencies; dropped KEYWORDS until we have |
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diff --git a/sci-biology/tophat/tophat-2.0.12.ebuild b/sci-biology/tophat/tophat-2.0.12.ebuild |
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index 13bb0f4..f818f1c 100644 |
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--- a/sci-biology/tophat/tophat-2.0.12.ebuild |
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+++ b/sci-biology/tophat/tophat-2.0.12.ebuild |
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@@ -29,8 +29,8 @@ DEPEND="dev-libs/boost" |
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# samtools_0.1.18 sort |
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# samtools_0.1.18 merge -f -h -u -Q --sam-header |
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RDEPEND="${DEPEND} |
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- >=sci-biology/samtools-0.1.17 |
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- <=sci-biology/samtools-0.1.19 |
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+ >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}] |
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+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}] |
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>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )" |
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# PATCHES=( "${FILESDIR}"/${P}-flags.patch ) |
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diff --git a/sci-biology/tophat/tophat-2.0.13.ebuild b/sci-biology/tophat/tophat-2.0.13.ebuild |
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index 6d4cdcb..c24d230 100644 |
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--- a/sci-biology/tophat/tophat-2.0.13.ebuild |
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+++ b/sci-biology/tophat/tophat-2.0.13.ebuild |
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@@ -29,8 +29,8 @@ DEPEND="dev-libs/boost" |
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# samtools_0.1.18 sort |
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# samtools_0.1.18 merge -f -h -u -Q --sam-header |
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RDEPEND="${DEPEND} |
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- >=sci-biology/samtools-0.1.17 |
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- <=sci-biology/samtools-0.1.19 |
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+ >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}] |
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+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}] |
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>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )" |
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# PATCHES=( "${FILESDIR}"/${P}-flags.patch ) |
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diff --git a/sci-biology/tophat/tophat-2.0.14.ebuild b/sci-biology/tophat/tophat-2.0.14.ebuild |
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index 2091866..579641f 100644 |
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--- a/sci-biology/tophat/tophat-2.0.14.ebuild |
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+++ b/sci-biology/tophat/tophat-2.0.14.ebuild |
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@@ -29,8 +29,8 @@ DEPEND="dev-libs/boost" |
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# samtools_0.1.18 sort |
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# samtools_0.1.18 merge -f -h -u -Q --sam-header |
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RDEPEND="${DEPEND} |
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- >=sci-biology/samtools-0.1.17 |
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- <=sci-biology/samtools-0.1.19 |
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+ >=sci-biology/samtools-0.1.17[${PYTHON_USEDEP}] |
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+ <=sci-biology/samtools-0.1.19[${PYTHON_USEDEP}] |
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>=sci-biology/bowtie-0.12.9 || ( >=sci-biology/bowtie-2.0.5 <=sci-biology/bowtie-2.2.3 )" |
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|
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# see https://aur.archlinux.org/packages/tophat/ about linking issues |
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