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commit: cc20c5c57f35f32361e627442c3550207c04e4b0 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Thu Dec 31 21:25:08 2015 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Thu Dec 31 21:25:08 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc20c5c5 |
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sci-biology/maker: DEPEND on external sci-biology/GAL package; rename 'compare' binary as agreed with upstream |
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Package-Manager: portage-2.2.26 |
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sci-biology/maker/ChangeLog | 4 ++++ |
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sci-biology/maker/maker-2.31.8.ebuild | 3 +++ |
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2 files changed, 7 insertions(+) |
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diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog |
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index 16cf654..c06e483 100644 |
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--- a/sci-biology/maker/ChangeLog |
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+++ b/sci-biology/maker/ChangeLog |
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@@ -2,6 +2,10 @@ |
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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# $Id$ |
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|
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+ 31 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild: |
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+ sci-biology/maker: DEPEND on external sci-biology/GAL package; rename |
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+ 'compare' binary as agreed with upstream |
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+ |
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30 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild: |
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sci-biology/maker: do install from a top-level directory; there is a file |
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collision with /usr/bin/compare from media-gfx/imagemagick and with |
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|
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diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild |
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index bb0dba6..60abb3a 100644 |
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--- a/sci-biology/maker/maker-2.31.8.ebuild |
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+++ b/sci-biology/maker/maker-2.31.8.ebuild |
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@@ -37,6 +37,7 @@ DEPEND=" |
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dev-perl/Perl-Unsafe-Signals |
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dev-perl/forks |
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dev-perl/forks-shared |
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+ >=sci-biology/GAL-0.2.1 |
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>=sci-biology/bioperl-1.6 |
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sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ ) |
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sci-biology/snap |
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@@ -103,6 +104,8 @@ src_compile(){ |
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|
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src_install(){ |
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cd "${WORKDIR}"/maker || die |
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+ rm -f bin/fasta_tool # is part of sci-biology/GAL |
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+ mv bin/compare bin/compare_gff3_to_chado # rename as agreed by upstream, will be in maker-3 as well |
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dobin bin/* |
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dodoc README INSTALL |
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insinto /usr/share/"{PN}"/GMOD/Apollo |
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