[gentoo-commits] proj/sci:master commit in: sci-biology/allpathslg/

[Justin Lecher]

commit:     a9c81628eca87f9cc79d8441dce83f7f0e9d68fd
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Mar 31 10:52:01 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Apr  1 06:16:35 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a9c81628

Moved to tree

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/allpathslg/ChangeLog               | 80 --------------------------
 sci-biology/allpathslg/allpathslg-52415.ebuild | 40 -------------
 sci-biology/allpathslg/metadata.xml            |  5 --
 3 files changed, 125 deletions(-)

diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog
deleted file mode 100644
index 41ef438..0000000
--- a/sci-biology/allpathslg/ChangeLog
+++ /dev/null
@@ -1,80 +0,0 @@
-# ChangeLog for sci-biology/allpathslg
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.16 2013/11/13 02:34:46 patrick Exp $
-
-  30 Mar 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
-  allpathslg-52415.ebuild:
-  sci-biology/allpathslg: noted another home-like web page
-
-  13 Nov 2013; Patrick Lauer <patrick@g.o> allpathslg-42337.ebuild,
-  allpathslg-47093.ebuild:
-  Removing x86 keyword as dependency sci-biology/vaal does not work on x86
-
-*allpathslg-47093 (17 Jul 2013)
-
-  17 Jul 2013; Justin Lecher <jlec@g.o> allpathslg-42337.ebuild,
-  +allpathslg-47093.ebuild:
-  Version Bump
-
-  11 Mar 2013; Justin Lecher <jlec@g.o> metadata.xml:
-  Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
-
-  20 Feb 2013; Justin Lecher <jlec@g.o> -allpathslg-37578.ebuild:
-  Drop old
-
-  20 Feb 2013; Agostino Sarubbo <ago@g.o> allpathslg-42337.ebuild:
-  Stable for amd64, wrt bug #458106
-
-  18 Feb 2013; Justin Lecher <jlec@g.o> -allpathslg-41839.ebuild,
-  metadata.xml:
-  Drop old
-
-  14 Dec 2012; Ulrich Müller <ulm@g.o> allpathslg-37578.ebuild,
-  allpathslg-41839.ebuild, allpathslg-42337.ebuild:
-  Fix LICENSE, MIT (Expat) according to COPYING file.
-
-  19 Nov 2012; Justin Lecher <jlec@g.o> allpathslg-37578.ebuild,
-  allpathslg-41839.ebuild, allpathslg-42337.ebuild:
-  Block sci-biology/allpaths due to file collision, #443740
-
-*allpathslg-42337 (09 Jul 2012)
-
-  09 Jul 2012; Justin Lecher <jlec@g.o> +allpathslg-42337.ebuild:
-  Version bump, fix compilation errors with gcc-4.7, #425472
-
-*allpathslg-41839 (29 May 2012)
-
-  29 May 2012; Andrey Kislyuk <weaver@g.o> -allpathslg-38573.ebuild,
-  -allpathslg-40063.ebuild, +allpathslg-41839.ebuild:
-  version bump
-
-*allpathslg-40063 (28 Dec 2011)
-
-  28 Dec 2011; Andrey Kislyuk <weaver@g.o>
-  -allpathslg-35725-r1.ebuild, +allpathslg-40063.ebuild:
-  Version bump, remove old
-
-  15 Oct 2011; Markos Chandras <hwoarang@g.o> allpathslg-37578.ebuild:
-  Stable on amd64 wrt bug #384379
-
-*allpathslg-38573 (25 Sep 2011)
-
-  25 Sep 2011; Andrey Kislyuk <weaver@g.o> +allpathslg-38573.ebuild:
-  Version bump
-
-*allpathslg-37578 (20 Jun 2011)
-
-  20 Jun 2011; Andrey Kislyuk <weaver@g.o> +allpathslg-37578.ebuild:
-  Version bump
-
-*allpathslg-35725-r1 (27 Jan 2011)
-
-  27 Jan 2011; Andrey Kislyuk <weaver@g.o> -allpathslg-35725.ebuild,
-  +allpathslg-35725-r1.ebuild:
-  Drop ~x86, avoid collision with sci-biology/vaal
-
-*allpathslg-35725 (25 Jan 2011)
-
-  25 Jan 2011; Andrey Kislyuk <weaver@g.o> +allpathslg-35725.ebuild,
-  +metadata.xml:
-  Package move from sci-biology/allpaths and version bump

diff --git a/sci-biology/allpathslg/allpathslg-52415.ebuild b/sci-biology/allpathslg/allpathslg-52415.ebuild
deleted file mode 100644
index ff7bdca..0000000
--- a/sci-biology/allpathslg/allpathslg-52415.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.6 2013/11/13 02:34:46 patrick Exp $
-
-EAPI=4
-
-inherit autotools flag-o-matic
-
-DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
-# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
-SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-# as of release 44849, GCC 4.7.0 (or higher) is required
-# seems pre gcc-4.7 users must stay with:
-# ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz
-DEPEND="
-	>=sys-devel/gcc-4.7
-	dev-libs/boost
-	!sci-biology/allpaths
-	sci-biology/vaal"
-RDEPEND=""
-
-src_prepare() {
-	sed -i 's/-ggdb3//' configure.ac || die
-	eautoreconf
-}
-
-src_install() {
-	einstall || die
-	# Provided by sci-biology/vaal
-	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
-		rm "${D}/usr/bin/$i" || die
-	done
-}

diff --git a/sci-biology/allpathslg/metadata.xml b/sci-biology/allpathslg/metadata.xml
deleted file mode 100644
index f17a827..0000000
--- a/sci-biology/allpathslg/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <herd>sci-biology</herd>
-</pkgmetadata>