From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/hmmer: hmmer-3.0_beta2.ebuild ChangeLog hmmer-3.0_beta1.ebuild |
Date: | Sun, 30 Aug 2009 13:55:55 |
Message-Id: | E1Mhphq-0005vF-RI@stork.gentoo.org |
1 | weaver 09/08/30 19:04:50 |
2 | |
3 | Modified: ChangeLog |
4 | Added: hmmer-3.0_beta2.ebuild |
5 | Removed: hmmer-3.0_beta1.ebuild |
6 | Log: |
7 | Bump and add parallel make workaround, bug 282813 |
8 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.26 sci-biology/hmmer/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.26&view=markup |
14 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.26&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?r1=1.25&r2=1.26 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v |
20 | retrieving revision 1.25 |
21 | retrieving revision 1.26 |
22 | diff -u -r1.25 -r1.26 |
23 | --- ChangeLog 21 Jun 2009 15:29:37 -0000 1.25 |
24 | +++ ChangeLog 30 Aug 2009 19:04:50 -0000 1.26 |
25 | @@ -1,6 +1,11 @@ |
26 | # ChangeLog for sci-biology/hmmer |
27 | # Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.25 2009/06/21 15:29:37 weaver Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.26 2009/08/30 19:04:50 weaver Exp $ |
30 | + |
31 | +*hmmer-3.0_beta2 (30 Aug 2009) |
32 | + |
33 | + 30 Aug 2009; Andrey Kislyuk <weaver@g.o> +hmmer-3.0_beta2.ebuild: |
34 | + Bump and add parallel make workaround, bug 282813 |
35 | |
36 | *hmmer-3.0_beta1 (21 Jun 2009) |
37 | |
38 | |
39 | |
40 | |
41 | 1.1 sci-biology/hmmer/hmmer-3.0_beta2.ebuild |
42 | |
43 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild?rev=1.1&view=markup |
44 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild?rev=1.1&content-type=text/plain |
45 | |
46 | Index: hmmer-3.0_beta2.ebuild |
47 | =================================================================== |
48 | # Copyright 1999-2009 Gentoo Foundation |
49 | # Distributed under the terms of the GNU General Public License v2 |
50 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_beta2.ebuild,v 1.1 2009/08/30 19:04:50 weaver Exp $ |
51 | |
52 | EAPI="2" |
53 | |
54 | MY_P="hmmer-3.0b2" |
55 | |
56 | DESCRIPTION="Sequence analysis using profile hidden Markov models" |
57 | HOMEPAGE="http://hmmer.janelia.org/" |
58 | SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" |
59 | |
60 | LICENSE="GPL-3" |
61 | SLOT="0" |
62 | IUSE="sse mpi threads" # gsl |
63 | KEYWORDS="~amd64 ~x86" |
64 | |
65 | # NB: compile failure with mpi, disabling temporarily |
66 | # gsl? ( sci-libs/gsl ) |
67 | # mpi? ( virtual/mpi ) |
68 | DEPEND="" |
69 | RDEPEND="${DEPEND}" |
70 | |
71 | S="${WORKDIR}/${MY_P}" |
72 | |
73 | src_configure() { |
74 | econf $(use_enable sse) \ |
75 | $(use_enable threads) || die |
76 | # $(use_enable mpi) \ |
77 | # $(use_with gsl) || die |
78 | } |
79 | |
80 | src_compile() { |
81 | emake -j1 || die |
82 | } |
83 | |
84 | src_install() { |
85 | emake DESTDIR="${D}" install || die |
86 | dolib src/libhmmer.a || die |
87 | dolib easel/libeasel.a || die |
88 | insinto /usr/share/${PN} |
89 | doins -r tutorial || die |
90 | dodoc RELEASE-NOTES Userguide.pdf |
91 | } |