From: | "Robin H. Johnson (robbat2)" <robbat2@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: Bio-SamTools-1.330.0.ebuild ChangeLog |
Date: | Wed, 29 Feb 2012 08:57:42 |
Message-Id: | 20120229085725.B1DF62004C@flycatcher.gentoo.org |
1 | robbat2 12/02/29 08:57:25 |
2 | |
3 | Modified: ChangeLog |
4 | Added: Bio-SamTools-1.330.0.ebuild |
5 | Log: |
6 | Version bump via perl-bump experimental tool. |
7 | |
8 | (Portage version: 2.2.0_alpha89/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.6 dev-perl/Bio-SamTools/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.6&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.6&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.5&r2=1.6 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v |
20 | retrieving revision 1.5 |
21 | retrieving revision 1.6 |
22 | diff -p -w -b -B -u -u -r1.5 -r1.6 |
23 | --- ChangeLog 25 Sep 2011 11:52:27 -0000 1.5 |
24 | +++ ChangeLog 29 Feb 2012 08:57:25 -0000 1.6 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for dev-perl/Bio-SamTools |
27 | -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.5 2011/09/25 11:52:27 tove Exp $ |
29 | +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
30 | +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.6 2012/02/29 08:57:25 robbat2 Exp $ |
31 | + |
32 | +*Bio-SamTools-1.330.0 (29 Feb 2012) |
33 | + |
34 | + 29 Feb 2012; Robin H. Johnson <robbat2@g.o> |
35 | + +Bio-SamTools-1.330.0.ebuild: |
36 | + Version bump via perl-bump experimental tool. |
37 | |
38 | *Bio-SamTools-1.310.0 (25 Sep 2011) |
39 | |
40 | |
41 | |
42 | |
43 | 1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild |
44 | |
45 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild?rev=1.1&view=markup |
46 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild?rev=1.1&content-type=text/plain |
47 | |
48 | Index: Bio-SamTools-1.330.0.ebuild |
49 | =================================================================== |
50 | # Copyright 1999-2012 Gentoo Foundation |
51 | # Distributed under the terms of the GNU General Public License v2 |
52 | # $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild,v 1.1 2012/02/29 08:57:25 robbat2 Exp $ |
53 | |
54 | EAPI=4 |
55 | |
56 | MODULE_AUTHOR=LDS |
57 | MODULE_VERSION=1.33 |
58 | inherit perl-module |
59 | |
60 | DESCRIPTION="Read SAM/BAM database files" |
61 | |
62 | SLOT="0" |
63 | KEYWORDS="~amd64 ~x86" |
64 | IUSE="" |
65 | |
66 | RDEPEND="sci-biology/bioperl |
67 | >=sci-biology/samtools-0.1.16" |
68 | DEPEND="${RDEPEND} |
69 | virtual/perl-ExtUtils-CBuilder |
70 | virtual/perl-Module-Build |
71 | " |
72 | |
73 | SRC_TEST=do |
74 | |
75 | src_prepare() { |
76 | sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ |
77 | -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die |
78 | sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ |
79 | -e 's|#include "khash.h"|#include "bam/khash.h"|' \ |
80 | -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die |
81 | perl-module_src_prepare |
82 | } |