Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/trinityrnaseq/
Date: Sat, 02 May 2015 16:29:37
Message-Id: 1430583277.fa3f2a761a2d68aee8b6ad302b9c0903a69f2d70.mmokrejs@gentoo
1 commit: fa3f2a761a2d68aee8b6ad302b9c0903a69f2d70
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Sat May 2 16:14:37 2015 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Sat May 2 16:14:37 2015 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fa3f2a76
7
8 sci-biology/trinityrnaseq: added missing quotes
9
10 Package-Manager: portage-2.2.18
11
12 sci-biology/trinityrnaseq/ChangeLog | 4 ++++
13 sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild | 18 +++++++++---------
14 2 files changed, 13 insertions(+), 9 deletions(-)
15
16 diff --git a/sci-biology/trinityrnaseq/ChangeLog b/sci-biology/trinityrnaseq/ChangeLog
17 index 7a31500..f4ce466 100644
18 --- a/sci-biology/trinityrnaseq/ChangeLog
19 +++ b/sci-biology/trinityrnaseq/ChangeLog
20 @@ -2,6 +2,10 @@
21 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
22 # $Header: $
23
24 + 02 May 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
25 + trinityrnaseq-2.0.6.ebuild:
26 + sci-biology/trinityrnaseq: added missing quotes
27 +
28 30 Apr 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
29 trinityrnaseq-2.0.6.ebuild:
30 sci-biology/trinityrnaseq: added a note and removed broken symlink upon
31
32 diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
33 index 2ec2290..6169bfb 100644
34 --- a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
35 +++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild
36 @@ -42,25 +42,25 @@ src_install(){
37 dobin trinity-plugins/fstrozzi-Fastool-7c3e034f05/fastool
38 dodoc trinity-plugins/fstrozzi-Fastool-7c3e034f05/README.md
39 #
40 - insinto /usr/share/${PN}/util
41 + insinto /usr/share/"${PN}"/util
42 rm -f util/fasta_tool
43 doins -r util/*
44 #
45 dobin Inchworm/bin/*
46 cd Chrysalis
47 dobin MakeDepend checkLock BreakTransByPairs Chrysalis GraphFromFasta IsoformAugment JoinTransByPairs QuantifyGraph ReadsToTranscripts RunButterfly TranscriptomeFromVaryK analysis/ReadsToComponents.pl
48 - cd ${S} || die
49 - insinto ${VENDOR_LIB}/${PN}
50 + cd "${S}" || die
51 + insinto "${VENDOR_LIB}/${PN}"
52 doins util/misc/PerlLib/*.pm PerlLib/*.pm
53 - insinto ${VENDOR_LIB}/${PN}/KmerGraphLib
54 + insinto "${VENDOR_LIB}/${PN}"/KmerGraphLib
55 doins PerlLib/KmerGraphLib/*.pm
56 - insinto ${VENDOR_LIB}/${PN}/CDNA
57 + insinto "${VENDOR_LIB}/${PN}"/CDNA
58 doins PerlLib/CDNA/*.pm
59 - insinto ${VENDOR_LIB}/${PN}/HPC
60 + insinto "${VENDOR_LIB}/${PN}"/HPC
61 doins PerlLib/HPC/*.pm
62 - insinto ${VENDOR_LIB}/${PN}/Simulate
63 + insinto "${VENDOR_LIB}/${PN}"/Simulate
64 doins PerlLib/Simulate/*.pm
65 - insinto ${VENDOR_LIB}/${PN}/CanvasXpress
66 + insinto "${VENDOR_LIB}/${PN}"/CanvasXpress
67 doins PerlLib/CanvasXpress/*.pm
68 - chmod a+rx -R ${ED}/${VENDOR_LIB}/${PN}
69 + chmod a+rx -R "${ED}/${VENDOR_LIB}/${PN}"
70 }