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commit: 3403656699bb4587f0dd0399078ab36c30535975 |
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Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org> |
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AuthorDate: Wed Aug 31 21:50:28 2016 +0000 |
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Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org> |
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CommitDate: Wed Aug 31 23:07:25 2016 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=34036566 |
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|
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dev-python/astropy: version bump. fix also xdg sandboxing issue |
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Gentoo-Bug: 587700 |
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|
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Package-Manager: portage-2.3.0 |
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|
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dev-python/astropy/Manifest | 1 + |
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dev-python/astropy/astropy-1.2.1.ebuild | 98 ++++++++++++++++++++++ |
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.../astropy/files/astropy-1.2.1-cfitsio-338.patch | 16 ++++ |
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3 files changed, 115 insertions(+) |
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|
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diff --git a/dev-python/astropy/Manifest b/dev-python/astropy/Manifest |
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index 2f4f81f..6cf0a59 100644 |
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--- a/dev-python/astropy/Manifest |
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+++ b/dev-python/astropy/Manifest |
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@@ -1 +1,2 @@ |
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DIST astropy-1.1.2.tar.gz 8059713 SHA256 6f0d84cd7dfb304bb437dda666406a1d42208c16204043bc920308ff8ffdfad1 SHA512 b83c4a1415a3eb8c016507705d0d2f22971e4da937bb97953eec08f8f856933d8fa76ce8c536122235b19e7879b16add2e20fd2fee3e488f9b2b4bf1b9f4dbdb WHIRLPOOL 01cdfd33c29f7128e88be3f53b7ecdec37d95ba06acae6ceeba83746e0454aa220396fb00519b30639ac01b5b297fad004488d34856295735e04924d154c4eb9 |
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+DIST astropy-1.2.1.tar.gz 8179665 SHA256 0d7ef702166f26fed239b59fc12edcd5243ca5bf562a36202fd8c6b0270d6e48 SHA512 2ef37537a4c6b2ec50a1d898f600978475c9c5d2cb66ba19d06782656e9ddcb4aa6a8e53217e318448cedac45dac0dce0d8cc2fe94cddc15ebb306b3b0794595 WHIRLPOOL d37374f23a0121fdc92fa572facc248f0a571dacb8edcf1a9d0987d6a40287de199262ec01f654bd6ea5aece826e5588d2869558152adffe9ab490fa46f2e36d |
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|
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diff --git a/dev-python/astropy/astropy-1.2.1.ebuild b/dev-python/astropy/astropy-1.2.1.ebuild |
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new file mode 100644 |
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index 00000000..20994e5 |
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--- /dev/null |
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+++ b/dev-python/astropy/astropy-1.2.1.ebuild |
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@@ -0,0 +1,98 @@ |
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+# Copyright 1999-2016 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=6 |
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+ |
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+PYTHON_COMPAT=( python2_7 python3_{4,5} ) |
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+ |
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+inherit distutils-r1 xdg-utils |
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+ |
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+DESCRIPTION="Core functionality for performing astrophysics with Python" |
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+HOMEPAGE="http://astropy.org/" |
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+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" |
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+ |
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+LICENSE="BSD" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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+IUSE="doc test" |
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+ |
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+RDEPEND=" |
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+ dev-libs/expat:0= |
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+ dev-python/configobj[${PYTHON_USEDEP}] |
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+ >=dev-python/numpy-1.10[${PYTHON_USEDEP}] |
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+ dev-python/ply[${PYTHON_USEDEP}] |
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+ dev-python/six[${PYTHON_USEDEP}] |
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+ >=sci-astronomy/erfa-1.2:0= |
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+ >=sci-astronomy/wcslib-5:0= |
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+ sci-libs/cfitsio:0= |
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+ sys-libs/zlib:0=" |
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+DEPEND="${RDEPEND} |
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+ >=dev-python/astropy-helpers-1.1[${PYTHON_USEDEP}] |
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+ dev-python/cython[${PYTHON_USEDEP}] |
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+ dev-python/setuptools[${PYTHON_USEDEP}] |
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+ virtual/pkgconfig |
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+ doc? ( |
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+ media-gfx/graphviz |
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+ $(python_gen_cond_dep 'dev-libs/libxml2[${PYTHON_USEDEP}]' python2_7) |
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+ $(python_gen_cond_dep 'dev-python/h5py[${PYTHON_USEDEP}]' python2_7) |
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+ $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]' python2_7) |
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+ $(python_gen_cond_dep 'dev-python/pytest[${PYTHON_USEDEP}]' python2_7) |
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+ $(python_gen_cond_dep 'dev-python/sphinx[${PYTHON_USEDEP}]' python2_7) |
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+ $(python_gen_cond_dep 'dev-python/wcsaxes[${PYTHON_USEDEP}]' python2_7) |
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+ $(python_gen_cond_dep 'sci-libs/scipy[${PYTHON_USEDEP}]'python2_7) |
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+ ) |
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+ test? ( |
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+ dev-libs/libxml2[${PYTHON_USEDEP}] |
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+ dev-python/pytest[${PYTHON_USEDEP}] |
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+ dev-python/h5py[${PYTHON_USEDEP}] |
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+ dev-python/matplotlib[${PYTHON_USEDEP}] |
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+ sci-libs/scipy[${PYTHON_USEDEP}] |
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+ )" |
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+ |
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+REQUIRED_USE="doc? ( || ( $(python_gen_useflags 'python2*') ) )" |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}/${PN}-1.0.4-system-six.patch" |
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+ "${FILESDIR}/${PN}-1.0.4-system-configobj.patch" |
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+ "${FILESDIR}/${PN}-1.1.1-mark-kown-failures.patch" |
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+ "${FILESDIR}/${PN}-1.2.1-cfitsio-338.patch" |
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+) |
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+ |
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+pkg_setup() { |
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+ use doc && DISTUTILS_ALL_SUBPHASE_IMPLS=( 'python2*' ) |
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+} |
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+ |
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+python_prepare_all() { |
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+ export mydistutilsargs="--offline" |
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+ export ASTROPY_USE_SYSTEM_PYTEST=True |
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+ rm -r ${PN}_helpers || die |
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+ cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die |
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+ rm -r cextern/{expat,erfa,cfitsio,wcslib} || die |
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+ sed -i -e '/auto_use/s/True/False/' setup.cfg || die |
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+ cat >> setup.cfg <<-EOF |
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+ [build] |
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+ use_system_libraries=1 |
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+ EOF |
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+ xdg_environment_reset |
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+ distutils-r1_python_prepare_all |
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+} |
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+ |
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+python_compile_all() { |
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+ if use doc; then |
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+ python_setup "python2*" |
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+ VARTEXFONTS="${T}"/fonts \ |
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+ MPLCONFIGDIR="${BUILD_DIR}" \ |
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+ PYTHONPATH="${BUILD_DIR}"/lib \ |
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+ esetup.py build_sphinx |
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+ fi |
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+} |
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+ |
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+python_test() { |
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+ esetup.py test |
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+} |
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+ |
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+python_install_all() { |
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+ use doc && local HTML_DOCS=( docs/_build/html/. ) |
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+ distutils-r1_python_install_all |
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+} |
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|
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diff --git a/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch |
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new file mode 100644 |
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index 00000000..9a688d9 |
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--- /dev/null |
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+++ b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch |
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@@ -0,0 +1,16 @@ |
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+Author: Ole Streicher <olebole@××××××.org> |
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+Description: Make TFORMx check more flexible |
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+ The maximal column length in cfitsio changed between version 3370 and 3380. |
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+ This patch checks their syntax, without a specific length. |
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+Bug: https://github.com/astropy/astropy/issues/4646 |
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+--- a/astropy/io/fits/tests/test_image.py |
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++++ b/astropy/io/fits/tests/test_image.py |
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+@@ -1070,7 +1070,7 @@ |
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+ hdu.writeto(self.temp('test.fits')) |
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+ |
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+ with fits.open(self.temp('test.fits')) as hdul: |
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+- assert (hdul['SCI'].data == cube).all() |
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++ assert np.abs(hdul['SCI'].data - cube).max() < 1./15. |
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+ |
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+ def test_subtractive_dither_seed(self): |
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+ """ |