[gentoo-commits] repo/gentoo:master commit in: sci-biology/biopython/

[David Seifert]

commit:     3ca7e670a753666e8f51fc8f34f038bf18e07a69
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Dec 30 18:12:11 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Dec 30 18:12:11 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ca7e670

sci-biology/biopython: drop 1.77

Closes: https://bugs.gentoo.org/757867
Closes: https://bugs.gentoo.org/780345
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/biopython/Manifest              |  1 -
 sci-biology/biopython/biopython-1.77.ebuild | 61 -----------------------------
 2 files changed, 62 deletions(-)

diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 9bc0eede97dc..014c48aa8401 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,2 +1 @@
-DIST biopython-1.77.tar.gz 16837021 BLAKE2B b5586f0ea3e476b11801dcc98039d5eea7b191e11d390192c0cf348018ded005fe2ad5dc9ba71c83aebc9cdde20c97244905dcc3aeb5436a97588da9f8c79c3e SHA512 6f4b03d46c591e1f49dd1e76bcc4ac5c9aaa2bf748c9dd37ffc5de5a613fbeed38f89b418c01601dd99c65b13b2e294bc8d81ffafc42a9ff1b309c84f840d0d5
 DIST biopython-1.79.tar.gz 16738730 BLAKE2B 8c97fc23e458f7bc98b0ed0226bd6fb42f6c6f3ce03d562b13fac66c5061451595cd5bd01cad07bbe1fc6b20f4de21b0f03766b5a20e602545da888047a57185 SHA512 81e2718f4015bb038637b4d1181e6bea48018fec1e769c5f0ab75442a769336899191f1222e82e1b9569c1fac470500d7582420e5cbe9bce0056b41751adeaaa

diff --git a/sci-biology/biopython/biopython-1.77.ebuild b/sci-biology/biopython/biopython-1.77.ebuild
deleted file mode 100644
index 1dcbc2101c45..000000000000
--- a/sci-biology/biopython/biopython-1.77.ebuild
+++ /dev/null
@@ -1,61 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7..9} )
-
-inherit distutils-r1 optfeature
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="https://www.biopython.org/ https://pypi.org/project/biopython/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-RDEPEND="
-	dev-python/matplotlib[${PYTHON_USEDEP}]
-	dev-python/networkx[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/rdflib[${PYTHON_USEDEP}]
-	dev-python/pygraphviz[${PYTHON_USEDEP}]
-	>=dev-python/reportlab-3.5.13-r1[${PYTHON_USEDEP}]
-	dev-python/pydot[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-BDEPEND="sys-devel/flex"
-
-DOCS=( {CONTRIB,DEPRECATED,NEWS,README}.rst Doc/. )
-
-python_test() {
-	distutils_install_for_testing
-	cp -r {Doc,Tests} "${TEST_DIR}"/lib/ || die
-
-	# need to create symlinks for doctests
-	mkdir -p "${TEST_DIR}"/lib/Bio/Align/substitution_matrices || die
-	ln -r -s "${S}"/Bio/Align/substitution_matrices/data \
-		"${TEST_DIR}"/lib/Bio/Align/substitution_matrices/data || die
-
-	cd "${TEST_DIR}"/lib/Tests || die
-	rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die
-	"${EPYTHON}" run_tests.py --offline --verbose || die
-}
-
-python_install_all() {
-	# remove files causing ecompressdir to fail
-	rm Doc/examples/ls_orchid.gbk.{gz,bz2} || die
-
-	distutils-r1_python_install_all
-
-	dodir /usr/share/${PN}
-	cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
-
-pkg_postinst() {
-	optfeature_header "For database support you need to install:"
-	optfeature "MySQL database support" dev-python/mysql-python
-	optfeature "PostgreSQL database support" dev-python/psycopg
-	optfeature_header "Some applications need extra packages:"
-	optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss
-}