Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ngs_backbone/
Date: Sat, 02 May 2015 16:29:29
Message-Id: 1430583109.7fb9ac3743cb1d1a58d5f79e27895985245dd11e.mmokrejs@gentoo
1 commit: 7fb9ac3743cb1d1a58d5f79e27895985245dd11e
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Sat May 2 16:11:49 2015 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Sat May 2 16:11:49 2015 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7fb9ac37
7
8 added PYTHON_USEDEP
9
10 Package-Manager: portage-2.2.18
11
12 sci-biology/ngs_backbone/ChangeLog | 6 +++++-
13 sci-biology/ngs_backbone/ngs_backbone-9999.ebuild | 14 +++++++-------
14 2 files changed, 12 insertions(+), 8 deletions(-)
15
16 diff --git a/sci-biology/ngs_backbone/ChangeLog b/sci-biology/ngs_backbone/ChangeLog
17 index 231e153..463e8e5 100644
18 --- a/sci-biology/ngs_backbone/ChangeLog
19 +++ b/sci-biology/ngs_backbone/ChangeLog
20 @@ -1,7 +1,11 @@
21 # ChangeLog for sci-biology/ngs_backbone
22 -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
23 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
24 # $Header: $
25
26 + 02 May 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
27 + ngs_backbone-9999.ebuild:
28 + added PYTHON_USEDEP
29 +
30 12 Sep 2014; Christoph Junghans <ottxor@g.o> ngs_backbone-9999.ebuild:
31 drop ~x86 as deps are missing
32
33
34 diff --git a/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild b/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild
35 index 1b4b65b..b2de334 100644
36 --- a/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild
37 +++ b/sci-biology/ngs_backbone/ngs_backbone-9999.ebuild
38 @@ -1,4 +1,4 @@
39 -# Copyright 1999-2014 Gentoo Foundation
40 +# Copyright 1999-2015 Gentoo Foundation
41 # Distributed under the terms of the GNU General Public License v2
42 # $Header: $
43
44 @@ -26,21 +26,21 @@ IUSE=""
45
46 DEPEND=""
47 RDEPEND="${DEPEND}
48 - sci-biology/biopython
49 - sci-biology/samtools
50 + sci-biology/biopython[${PYTHON_USEDEP}]
51 + sci-biology/samtools[${PYTHON_USEDEP}]
52 sci-biology/picard
53 sci-biology/mira
54 sci-biology/bwa
55 sci-biology/gatk
56 - sci-biology/pysam
57 + sci-biology/pysam[${PYTHON_USEDEP}]
58 sci-biology/estscan
59 sci-biology/ncbi-tools
60 sci-biology/lucy
61 sci-biology/gmap
62 sci-biology/emboss
63 - dev-python/matplotlib
64 - dev-python/psubprocess
65 - dev-python/configobj"
66 + dev-python/matplotlib[${PYTHON_USEDEP}]
67 + dev-python/psubprocess[${PYTHON_USEDEP}]
68 + dev-python/configobj[${PYTHON_USEDEP}]"
69 # ( blast2GO || b2g4pipe )
70 # sci-biology/sputnik
71 # sci-biology/gsnap