From: | "Markus Dittrich (markusle)" <markusle@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.7.2.ebuild vienna-rna-1.6.1.ebuild vienna-rna-1.6.5.ebuild |
Date: | Fri, 29 Aug 2008 01:21:42 |
Message-Id: | E1KYsgF-0007n6-9K@stork.gentoo.org |
1 | markusle 08/08/29 01:21:39 |
2 | |
3 | Modified: ChangeLog |
4 | Added: vienna-rna-1.7.2.ebuild |
5 | Removed: vienna-rna-1.6.1.ebuild vienna-rna-1.6.5.ebuild |
6 | Log: |
7 | Version bump and removed old ebuilds (fixes bug #235943). |
8 | (Portage version: 2.2_rc8/cvs/Linux 2.6.26-SENTINEL-2 i686) |
9 | |
10 | Revision Changes Path |
11 | 1.17 sci-biology/vienna-rna/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.17&view=markup |
14 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.17&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.16&r2=1.17 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v |
20 | retrieving revision 1.16 |
21 | retrieving revision 1.17 |
22 | diff -u -r1.16 -r1.17 |
23 | --- ChangeLog 6 Aug 2008 15:06:58 -0000 1.16 |
24 | +++ ChangeLog 29 Aug 2008 01:21:38 -0000 1.17 |
25 | @@ -1,6 +1,14 @@ |
26 | # ChangeLog for sci-biology/vienna-rna |
27 | # Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.16 2008/08/06 15:06:58 ulm Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.17 2008/08/29 01:21:38 markusle Exp $ |
30 | + |
31 | +*vienna-rna-1.7.2 (28 Aug 2008) |
32 | + |
33 | + 28 Aug 2008; Markus Dittrich <markusle@g.o> |
34 | + +files/vienna-rna-1.7.2-gcc4.3.patch, -vienna-rna-1.6.1.ebuild, |
35 | + -vienna-rna-1.6.5.ebuild, +vienna-rna-1.7.2.ebuild: |
36 | + Version bump and removed old ebuilds (fixes bug #235943). Thanks much to |
37 | + Chad A. Simmons <chad.simmons@××××××××××.org> for his ebuild and patches. |
38 | |
39 | 06 Aug 2008; Ulrich Mueller <ulm@g.o> metadata.xml: |
40 | Add USE flag description to metadata wrt GLEP 56. |
41 | |
42 | |
43 | |
44 | 1.1 sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild |
45 | |
46 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?rev=1.1&view=markup |
47 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?rev=1.1&content-type=text/plain |
48 | |
49 | Index: vienna-rna-1.7.2.ebuild |
50 | =================================================================== |
51 | # Copyright 1999-2008 Gentoo Foundation |
52 | # Distributed under the terms of the GNU General Public License v2 |
53 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild,v 1.1 2008/08/29 01:21:38 markusle Exp $ |
54 | |
55 | inherit toolchain-funcs multilib eutils versionator |
56 | |
57 | DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison" |
58 | LICENSE="vienna-rna" |
59 | HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA" |
60 | SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz" |
61 | |
62 | SLOT="0" |
63 | IUSE="" |
64 | KEYWORDS="~amd64 ~x86 ~ppc" |
65 | |
66 | DEPEND="dev-lang/perl |
67 | media-libs/gd" |
68 | |
69 | S="${WORKDIR}/ViennaRNA-${PV}" |
70 | |
71 | src_unpack() { |
72 | unpack ${A} |
73 | cd "${S}" |
74 | epatch "${FILESDIR}"/${PN}-1.6.5-c-fixes.patch |
75 | epatch "${FILESDIR}"/${P}-gcc4.3.patch |
76 | } |
77 | |
78 | src_compile() { |
79 | econf --with-cluster || die "Configuration failed." |
80 | sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/$(get_libdir):" \ |
81 | -e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \ |
82 | -i RNAforester/g2-0.70/Makefile \ |
83 | || die "Failed patching RNAForester build system." |
84 | emake || die "Compilation failed." |
85 | |
86 | cd "${S}"/Readseq |
87 | sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \ |
88 | -i Makefile || die "Failed patching readseq Makefile." |
89 | make || die "Failed to compile readseq." |
90 | # TODO: Add (optional?) support for the NCBI toolkit. |
91 | } |
92 | |
93 | src_install() { |
94 | make install DESTDIR="${D}" || die "Installation failed." |
95 | dodoc AUTHORS ChangeLog NEWS README THANKS \ |
96 | || die "Failed to install documentation." |
97 | newbin Readseq/readseq readseq-vienna \ |
98 | || die "Installing readseq failed." |
99 | dodoc Readseq/Readseq.help || die \ |
100 | "Readseq Documentation installation failed." |
101 | newdoc Readseq/Readme README.readseq && \ |
102 | newdoc Readseq/Formats Formats.readseq \ |
103 | || die "Installing readseq Readme failed." |
104 | } |