[gentoo-commits] proj/sci:master commit in: sci-biology/lighter/

[Martin Mokrejs]

commit:     f0525146c4040655c2e34e13a6d8ecdcaeec172b
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri May  1 21:47:38 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri May  1 21:47:38 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0525146

sci-libs/lighter: new package; contains IUSE=threads but ... does the Makefile need a tweak for -lpthreads ? ;-). Go ahead and fix this.

Package-Manager: portage-2.2.18

 sci-biology/lighter/ChangeLog           | 10 +++++++++
 sci-biology/lighter/lighter-9999.ebuild | 36 +++++++++++++++++++++++++++++++++
 sci-biology/lighter/metadata.xml        |  9 +++++++++
 3 files changed, 55 insertions(+)

diff --git a/sci-biology/lighter/ChangeLog b/sci-biology/lighter/ChangeLog
new file mode 100644
index 0000000..a24b936
--- /dev/null
+++ b/sci-biology/lighter/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/lighter
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*lighter-9999 (01 May 2015)
+
+  01 May 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +lighter-9999.ebuild, +metadata.xml:
+  sci-libs/lighter: new package; contains IUSE=threads but ... does the Makefile
+  need a tweak for -lpthreads ? ;-). Go ahead and fix this.

diff --git a/sci-biology/lighter/lighter-9999.ebuild b/sci-biology/lighter/lighter-9999.ebuild
new file mode 100644
index 0000000..8e2319a
--- /dev/null
+++ b/sci-biology/lighter/lighter-9999.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit toolchain-funcs
+
+[ "$PV" == "9999" ] && inherit git-r3
+
+DESCRIPTION="NGS reads corrector"
+HOMEPAGE="https://github.com/mourisl/Lighter"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/mourisl/Lighter.git"
+	KEYWORDS=""
+else
+	SRC_URI=""
+	KEYWORDS=""
+fi
+
+LICENSE="GPL-2+"
+SLOT="0"
+IUSE="threads"
+
+DEPEND="sys-libs/zlib
+	sci-libs/bloom"
+RDEPEND="${DEPEND}"
+
+src_prepare(){
+	sed -e "s#g++#$(tc-getCC)#;s#-Wall -O3#${CXXFLAGS}#" -i Makefile || die
+}
+
+src_install(){
+	dobin lighter
+	dodoc README.md
+}

diff --git a/sci-biology/lighter/metadata.xml b/sci-biology/lighter/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/lighter/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>