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commit: fdadb1aefebd39ecb3836948d4008deba80cb903 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Wed Mar 30 14:35:37 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Wed Mar 30 14:35:37 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fdadb1ae |
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|
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sci-biology/perga: added some LICENSE, fix CFLAGS |
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|
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Package-Manager: portage-2.2.28 |
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|
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sci-biology/perga/metadata.xml | 12 ++++++++++++ |
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sci-biology/perga/perga-9999.ebuild | 36 ++++++++++++++++++++++++++++++++++++ |
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2 files changed, 48 insertions(+) |
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|
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diff --git a/sci-biology/perga/metadata.xml b/sci-biology/perga/metadata.xml |
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new file mode 100644 |
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index 0000000..f68a1b6 |
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--- /dev/null |
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+++ b/sci-biology/perga/metadata.xml |
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@@ -0,0 +1,12 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <maintainer type="person"> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+ <maintainer type="project"> |
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+ <email>sci-biology@g.o</email> |
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+ <name>Gentoo Biology Project</name> |
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+ </maintainer> |
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+</pkgmetadata> |
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|
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diff --git a/sci-biology/perga/perga-9999.ebuild b/sci-biology/perga/perga-9999.ebuild |
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new file mode 100644 |
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index 0000000..4f79d72 |
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--- /dev/null |
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+++ b/sci-biology/perga/perga-9999.ebuild |
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@@ -0,0 +1,36 @@ |
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+# Copyright 1999-2016 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=5 |
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+ |
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+inherit git-r3 eutils toolchain-funcs |
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+ |
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+DESCRIPTION="Paired End Reads Guided Assembler" |
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+HOMEPAGE="https://github.com/hitbio/PERGA |
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+ http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104" |
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+EGIT_REPO_URI="https://github.com/hitbio/PERGA.git" |
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+ |
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+LICENSE="all-rights-reserved" |
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+SLOT="0" |
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+KEYWORDS="" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND}" |
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+ |
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+src_prepare(){ |
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+ sed -e "s/gcc -g /$(tc-getCC) ${CFLAGS} ${LDFLAGS} /" -i src/Makefile || die |
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+ sed -e 's/-Wl,-O1//' -i src/Makefile || die |
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+} |
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+ |
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+# does not compile with gcc-5.3.0 but 4.9.3 works |
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+src_compile(){ |
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+ cd src || die |
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+ emake |
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+} |
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+ |
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+src_install(){ |
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+ dobin src/perga |
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+ dodoc README |
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+} |