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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/hmmer: ChangeLog hmmer-3.0_alpha2.ebuild |
| Date: | Sat, 02 May 2009 06:08:30 |
| Message-Id: | E1M08Oh-0006eX-Qw@stork.gentoo.org |
| 1 | weaver 09/05/02 06:08:27 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: hmmer-3.0_alpha2.ebuild |
| 5 | Log: |
| 6 | Version bump (pre-release) |
| 7 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
| 8 | |
| 9 | Revision Changes Path |
| 10 | 1.24 sci-biology/hmmer/ChangeLog |
| 11 | |
| 12 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.24&view=markup |
| 13 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?rev=1.24&content-type=text/plain |
| 14 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/ChangeLog?r1=1.23&r2=1.24 |
| 15 | |
| 16 | Index: ChangeLog |
| 17 | =================================================================== |
| 18 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v |
| 19 | retrieving revision 1.23 |
| 20 | retrieving revision 1.24 |
| 21 | diff -u -r1.23 -r1.24 |
| 22 | --- ChangeLog 6 Aug 2008 14:58:18 -0000 1.23 |
| 23 | +++ ChangeLog 2 May 2009 06:08:27 -0000 1.24 |
| 24 | @@ -1,6 +1,11 @@ |
| 25 | # ChangeLog for sci-biology/hmmer |
| 26 | -# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 |
| 27 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.23 2008/08/06 14:58:18 ulm Exp $ |
| 28 | +# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.24 2009/05/02 06:08:27 weaver Exp $ |
| 30 | + |
| 31 | +*hmmer-3.0_alpha2 (02 May 2009) |
| 32 | + |
| 33 | + 02 May 2009; Andrey Kislyuk <weaver@g.o> +hmmer-3.0_alpha2.ebuild: |
| 34 | + Version bump (pre-release) |
| 35 | |
| 36 | 06 Aug 2008; Ulrich Mueller <ulm@g.o> metadata.xml: |
| 37 | Add USE flag description to metadata wrt GLEP 56. |
| 38 | |
| 39 | |
| 40 | |
| 41 | 1.1 sci-biology/hmmer/hmmer-3.0_alpha2.ebuild |
| 42 | |
| 43 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild?rev=1.1&view=markup |
| 44 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild?rev=1.1&content-type=text/plain |
| 45 | |
| 46 | Index: hmmer-3.0_alpha2.ebuild |
| 47 | =================================================================== |
| 48 | # Copyright 1999-2009 Gentoo Foundation |
| 49 | # Distributed under the terms of the GNU General Public License v2 |
| 50 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild,v 1.1 2009/05/02 06:08:27 weaver Exp $ |
| 51 | |
| 52 | EAPI="2" |
| 53 | |
| 54 | MY_P="hmmer-3.0a2" |
| 55 | |
| 56 | DESCRIPTION="Sequence analysis using profile hidden Markov models" |
| 57 | HOMEPAGE="http://hmmer.janelia.org/" |
| 58 | SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" |
| 59 | |
| 60 | LICENSE="GPL-3" |
| 61 | SLOT="0" |
| 62 | IUSE="sse mpi threads" # gsl |
| 63 | KEYWORDS="~amd64 ~x86" |
| 64 | |
| 65 | # gsl? ( sci-libs/gsl ) |
| 66 | DEPEND="mpi? ( virtual/mpi )" |
| 67 | RDEPEND="${DEPEND}" |
| 68 | |
| 69 | S="${WORKDIR}/${MY_P}" |
| 70 | |
| 71 | src_configure() { |
| 72 | econf $(use_enable sse) \ |
| 73 | $(use_enable mpi) \ |
| 74 | $(use_enable threads) || die |
| 75 | # $(use_with gsl) || die |
| 76 | } |
| 77 | |
| 78 | src_install() { |
| 79 | emake DESTDIR="${D}" install || die |
| 80 | dolib src/libhmmer.a || die |
| 81 | dolib easel/libeasel.a || die |
| 82 | insinto /usr/share/${PN} |
| 83 | doins -r tutorial || die |
| 84 | dodoc RELEASE-NOTES Userguide.pdf |
| 85 | } |