[gentoo-commits] gentoo-x86 commit in sci-biology/amap: ChangeLog amap-2.2.ebuild

[Markus Dittrich (markusle)]

markusle    08/04/17 18:20:13

  Modified:             ChangeLog
  Added:                amap-2.2.ebuild
  Log:
  Version bump and gcc-4.3 compatibility patch (fixes bug #217921).
  (Portage version: 2.1.5_rc3)

Revision  Changes    Path
1.4                  sci-biology/amap/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amap/ChangeLog?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amap/ChangeLog?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amap/ChangeLog?r1=1.3&r2=1.4

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/amap/ChangeLog,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- ChangeLog	3 Feb 2008 04:37:36 -0000	1.3
+++ ChangeLog	17 Apr 2008 18:20:13 -0000	1.4
@@ -1,6 +1,14 @@
 # ChangeLog for sci-biology/amap
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amap/ChangeLog,v 1.3 2008/02/03 04:37:36 je_fro Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amap/ChangeLog,v 1.4 2008/04/17 18:20:13 markusle Exp $
+
+*amap-2.2 (17 Apr 2008)
+
+  17 Apr 2008; Markus Dittrich <markusle@g.o>
+  +files/amap-2.2-cxxflags.patch, +files/amap-2.2-gcc4.3.patch,
+  +amap-2.2.ebuild:
+  Version bump and gcc-4.3 compatibility patch (fixes bug #217921). Thanks
+  much to Peter Alfredsen <peter.alfredsen@×××××.com> for his patches.
 
   15 Oct 2007; Jeff Gardner <je_fro@g.o> amap-2.1.ebuild:
   Adding ~amd64



1.1                  sci-biology/amap/amap-2.2.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amap/amap-2.2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/amap/amap-2.2.ebuild?rev=1.1&content-type=text/plain

Index: amap-2.2.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/amap/amap-2.2.ebuild,v 1.1 2008/04/17 18:20:13 markusle Exp $

inherit eutils toolchain-funcs

MY_P="${PN}.${PV}"
DESCRIPTION="Protein multiple-alignment-based sequence annealing"
HOMEPAGE="http://bio.math.berkeley.edu/amap/"
SRC_URI="http://baboon.math.berkeley.edu/amap/download/${MY_P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""
RDEPEND=""
DEPEND="${RDEPEND}"
S="${WORKDIR}/${PN}-align"

src_unpack() {
	unpack ${A}
	cd "${S}"
	epatch "${FILESDIR}"/${P}-cxxflags.patch
	epatch "${FILESDIR}"/${P}-gcc4.3.patch
}

src_compile() {
	cd "${S}"/align
	emake \
		CXX="$(tc-getCXX)" \
		OPT_CXXFLAGS="${CXXFLAGS}" \
		|| die "make failed"
}

src_install() {
	dobin align/${PN}
	dodoc align/README align/PROBCONS.README
	insinto /usr/share/${PN}/examples
	doins examples/* || die "Failed to install examples"
}



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