[gentoo-commits] gentoo-x86 commit in sci-biology/paml: ChangeLog paml-4.1.ebuild paml-4a.ebuild paml-3.15.ebuild

[Markus Dittrich (markusle)]

markusle    08/09/07 12:02:03

  Modified:             ChangeLog
  Added:                paml-4.1.ebuild
  Removed:              paml-4a.ebuild paml-3.15.ebuild
  Log:
  Version bump and removed old ebuilds.
  (Portage version: 2.2_rc8/cvs/Linux 2.6.26-SENTINEL-2 i686)

Revision  Changes    Path
1.4                  sci-biology/paml/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?r1=1.3&r2=1.4

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- ChangeLog	20 Apr 2008 11:11:20 -0000	1.3
+++ ChangeLog	7 Sep 2008 12:02:02 -0000	1.4
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/paml
 # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.3 2008/04/20 11:11:20 markusle Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.4 2008/09/07 12:02:02 markusle Exp $
+
+*paml-4.1 (07 Sep 2008)
+
+  07 Sep 2008; Markus Dittrich <markusle@g.o> -paml-3.15.ebuild,
+  +paml-4.1.ebuild, -paml-4a.ebuild:
+  Version bump and removed old ebuilds.
 
 *paml-4b (20 Apr 2008)
 



1.1                  sci-biology/paml/paml-4.1.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/paml-4.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/paml-4.1.ebuild?rev=1.1&content-type=text/plain

Index: paml-4.1.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.1.ebuild,v 1.1 2008/09/07 12:02:02 markusle Exp $

inherit toolchain-funcs

MY_PV="${PV/./}"
DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
LICENSE="free-noncomm"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""
RDEPEND=""
DEPEND="${RDEPEND}"
S="${WORKDIR}/${PN}${MY_PV}"

src_compile() {
	cd src
	emake \
		-f Makefile.UNIX \
		CC="$(tc-getCC)" \
		CFLAGS="${CFLAGS}" \
		|| die "make failed"
}

src_install() {
	pushd "${S}"/src
	dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 \
		|| die "Failed to install binaries"
	popd

	dodoc README.txt doc/* || die "Failed to install docs"

	insinto /usr/share/${PN}/control
	doins *.ctl || die "Failed to install control files"

	insinto /usr/share/${PN}/dat
	doins stewart* *.dat dat/* || die "Failed to install data files"

	insinto /usr/share/${PN}
	doins -r examples/ || die "Failed to install examples"
}