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To: gentoo-commits@g.o
From: "Justin Lecher (jlec)" <jlec@g.o>
Subject: gentoo-x86 commit in sci-chemistry/pdb-extract: ChangeLog pdb-extract-3.11.ebuild
Date: Sat, 23 Jun 2012 18:57:05 +0000 (UTC)
jlec        12/06/23 18:57:05

  Modified:             ChangeLog
  Added:                pdb-extract-3.11.ebuild
  Log:
  sci-chemistry/pdb-extract: Version Bump, #379159
  
  (Portage version: 2.2.0_alpha111/cvs/Linux x86_64)

Revision  Changes    Path
1.21                 sci-chemistry/pdb-extract/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog?rev=1.21&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog?rev=1.21&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog?r1=1.20&r2=1.21

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -r1.20 -r1.21
--- ChangeLog	24 Apr 2012 06:55:49 -0000	1.20
+++ ChangeLog	23 Jun 2012 18:57:05 -0000	1.21
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/pdb-extract
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.20 2012/04/24 06:55:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.21 2012/06/23 18:57:05 jlec Exp $
+
+*pdb-extract-3.11 (23 Jun 2012)
+
+  23 Jun 2012; Justin Lecher <jlec@g.o> +pdb-extract-3.11.ebuild,
+  +files/pdb-extract-3.11-cflags-install.patch,
+  +files/pdb-extract-3.11-gcc-4.7.patch:
+  Version Bump, #379159
 
   24 Apr 2012; Justin Lecher <jlec@g.o>
   -files/respect-cflags-and-fix-install.patch:



1.1                  sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild?rev=1.1&content-type=text/plain

Index: pdb-extract-3.11.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.11.ebuild,v 1.1 2012/06/23 18:57:05 jlec Exp $

EAPI=4

inherit eutils toolchain-funcs multilib prefix

MY_P="${PN}-v${PV}-prod-src"

DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"

LICENSE="PDB"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE=""

RDEPEND="!<app-text/html-xml-utils-5.3"
DEPEND="${RDEPEND}
	>=sci-libs/cifparse-obj-7.025"

S="${WORKDIR}/${MY_P}"

MAKEOPTS+=" -j1"

src_prepare() {
	epatch \
		"${FILESDIR}"/${P}-cflags-install.patch \
		"${FILESDIR}"/${P}-gcc-4.7.patch \
		"${FILESDIR}"/${PN}-3.004-env.patch

	sed -i \
		-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
		-e "s:^\(CC=\).*:\1$(tc-getCC):g" \
		-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \
		-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \
		"${S}"/etc/make.* \
		|| die "Failed to fix makefiles"

	eprefixify pdb-extract-v3.0/Makefile etc/*
}

src_install() {
	exeinto /usr/libexec/ccp4/bin
	doexe bin/pdb_extract{,_sf} bin/extract
	insinto /usr/include/rcsb
	doins include/*
	dodoc README*
	insinto /usr/share/rcsb/
	doins -r pdb-extract-data

	cat >> "${T}"/envd <<- EOF
	PDB_EXTRACT="${EPREFIX}/usr/share/rcsb/"
	PDB_EXTRACT_ROOT="${EPREFIX}/usr/"
	EOF

	newenvd "${T}"/envd 20pdb-extract
}





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Updated Jun 26, 2012

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