1 |
commit: adf984e1511df9c07f22c0117b8d8da3e945595e |
2 |
Author: Guillaume Horel <guillaume.horel <AT> gmail <DOT> com> |
3 |
AuthorDate: Thu Jun 30 13:28:19 2011 +0000 |
4 |
Commit: Guillaume Horel <guillaume.horel <AT> gmail <DOT> com> |
5 |
CommitDate: Thu Jun 30 13:28:19 2011 +0000 |
6 |
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=adf984e1 |
7 |
|
8 |
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci into guillaume |
9 |
|
10 |
Conflicts: |
11 |
sci-mathematics/scilab/Manifest |
12 |
|
13 |
|
14 |
app-doc/gromacs-manual/ChangeLog | 12 +- |
15 |
app-doc/gromacs-manual/Manifest | 18 +- |
16 |
app-doc/gromacs-manual/gromacs-manual-9999.ebuild | 11 +- |
17 |
app-doc/gromacs-manual/metadata.xml | 2 +- |
18 |
app-portage/g-cran/ChangeLog | 6 +- |
19 |
app-portage/g-cran/Manifest | 16 +- |
20 |
app-portage/g-cran/g-cran-9999.ebuild | 4 +- |
21 |
app-portage/g-cran/metadata.xml | 4 +- |
22 |
app-text/dgs/ChangeLog | 5 +- |
23 |
app-text/dgs/Manifest | 22 +- |
24 |
app-text/dgs/dgs-0.5.10-r2.ebuild | 4 +- |
25 |
app-vim/freefem++-syntax/ChangeLog | 5 +- |
26 |
app-vim/freefem++-syntax/Manifest | 22 +- |
27 |
app-vim/freefem++-syntax/metadata.xml | 4 +- |
28 |
dev-cpp/growler-link/ChangeLog | 11 +- |
29 |
dev-cpp/growler-link/Manifest | 22 +- |
30 |
dev-cpp/growler-link/growler-link-0.3.7.ebuild | 25 +- |
31 |
dev-java/jgraphx/ChangeLog | 8 +- |
32 |
dev-java/jgraphx/jgraphx-1.4.1.0.ebuild | 42 + |
33 |
dev-lang/aldor/ChangeLog | 22 - |
34 |
dev-lang/aldor/Manifest | 9 - |
35 |
dev-lang/aldor/aldor-1.1.0.ebuild | 79 - |
36 |
dev-lang/aldor/files/aldor-1.1.0.patch | 23 - |
37 |
dev-lang/aldor/metadata.xml | 19 - |
38 |
dev-libs/libunzip/ChangeLog | 5 +- |
39 |
dev-libs/libunzip/Manifest | 22 +- |
40 |
dev-libs/libunzip/libunzip-5.52.ebuild | 4 +- |
41 |
dev-ml/ocamlgraph/ChangeLog | 3 + |
42 |
dev-ml/ocamlgraph/Manifest | 14 +- |
43 |
dev-ml/ocamlgraph/ocamlgraph-1.7.ebuild | 4 +- |
44 |
dev-perl/Lab-Tools/ChangeLog | 5 +- |
45 |
dev-perl/Lab-Tools/Manifest | 14 +- |
46 |
dev-perl/Lab-Tools/metadata.xml | 2 +- |
47 |
dev-python/coords/ChangeLog | 6 +- |
48 |
dev-python/coords/Manifest | 16 +- |
49 |
dev-python/coords/coords-0.37.ebuild | 10 +- |
50 |
dev-python/coords/metadata.xml | 4 +- |
51 |
dev-python/cvxopt/ChangeLog | 11 + |
52 |
dev-python/cvxopt/Manifest | 13 +- |
53 |
dev-python/cvxopt/cvxopt-1.1.3.ebuild | 28 +- |
54 |
dev-python/cvxopt/files/cvxopt-1.1.3-blas.patch | 76 + |
55 |
dev-python/cvxopt/metadata.xml | 3 + |
56 |
dev-python/ffc/Manifest | 11 + |
57 |
dev-python/ffnet/ChangeLog | 8 +- |
58 |
dev-python/ffnet/Manifest | 12 +- |
59 |
dev-python/ffnet/ffnet-0.6.2.ebuild | 20 +- |
60 |
dev-python/fiat/Manifest | 11 + |
61 |
dev-python/inference/ChangeLog | 11 +- |
62 |
dev-python/inference/Manifest | 14 +- |
63 |
dev-python/inference/inference-0.4.ebuild | 20 +- |
64 |
dev-python/instant/Manifest | 11 + |
65 |
dev-python/numpydoc/ChangeLog | 6 +- |
66 |
dev-python/numpydoc/Manifest | 16 +- |
67 |
dev-python/numpydoc/metadata.xml | 6 +- |
68 |
dev-python/numpydoc/numpydoc-0.4.ebuild | 9 +- |
69 |
dev-python/numscons/ChangeLog | 6 +- |
70 |
dev-python/numscons/Manifest | 16 +- |
71 |
dev-python/numscons/metadata.xml | 4 +- |
72 |
dev-python/numscons/numscons-0.10.1.ebuild | 10 +- |
73 |
dev-python/omniorbpy/ChangeLog | 5 +- |
74 |
dev-python/omniorbpy/Manifest | 12 +- |
75 |
dev-python/omniorbpy/omniorbpy-3.4.ebuild | 4 +- |
76 |
dev-python/pymvpa/ChangeLog | 8 + |
77 |
dev-python/pymvpa/Manifest | 15 +- |
78 |
dev-python/pymvpa/metadata.xml | 6 +- |
79 |
dev-python/pymvpa/pymvpa-0.4.4.ebuild | 16 +- |
80 |
dev-python/pythoncgns/ChangeLog | 5 +- |
81 |
dev-python/pythoncgns/Manifest | 14 +- |
82 |
dev-python/pythoncgns/pythoncgns-2009.10.30.ebuild | 11 +- |
83 |
dev-python/ufl/Manifest | 11 + |
84 |
dev-python/viper/Manifest | 11 + |
85 |
dev-util/smartgit/ChangeLog | 5 +- |
86 |
dev-util/smartgit/Manifest | 12 +- |
87 |
dev-util/smartgit/metadata.xml | 2 +- |
88 |
eclass/fortran-2.eclass | 172 - |
89 |
media-gfx/brlcad/ChangeLog | 89 - |
90 |
media-gfx/brlcad/Manifest | 22 - |
91 |
media-gfx/brlcad/metadata.xml | 34 - |
92 |
media-gfx/librecad/ChangeLog | 7 + |
93 |
media-gfx/librecad/Manifest | 17 +- |
94 |
media-gfx/librecad/librecad-1.0.0_beta5.ebuild | 2 +- |
95 |
media-gfx/librecad/librecad-1.0.0_rc1.ebuild | 42 + |
96 |
media-gfx/librecad/librecad-9999.ebuild | 2 +- |
97 |
net-firewall/gcb/ChangeLog | 5 +- |
98 |
net-firewall/gcb/Manifest | 26 +- |
99 |
net-firewall/gcb/gcb-1.5.6.ebuild | 13 +- |
100 |
net-firewall/gcb/metadata.xml | 10 +- |
101 |
net-ftp/bbftp-server/ChangeLog | 5 +- |
102 |
net-ftp/bbftp-server/Manifest | 22 +- |
103 |
net-ftp/bbftp-server/bbftp-server-3.2.0.ebuild | 4 +- |
104 |
net-misc/dhcp/ChangeLog | 11 + |
105 |
net-misc/dhcp/Manifest | 45 + |
106 |
net-misc/dhcp/dhcp-4.2.1_p1-r1.ebuild | 231 + |
107 |
net-misc/dhcp/files/dhcp-3.0-fix-perms.patch | 15 + |
108 |
net-misc/dhcp/files/dhcp-3.0-paranoia.patch | 207 + |
109 |
net-misc/dhcp/files/dhcp-3.0.2-gmake.patch | 66 + |
110 |
net-misc/dhcp/files/dhcp-3.0.3-dhclient-dbus.patch | 84 + |
111 |
.../dhcp/files/dhcp-3.0.3-dhclient-hostname.patch | 16 + |
112 |
.../dhcp/files/dhcp-3.0.3-dhclient-metric.patch | 200 + |
113 |
net-misc/dhcp/files/dhcp-3.0.3-dhclient-mtu.patch | 180 + |
114 |
.../dhcp/files/dhcp-3.0.3-dhclient-no-down.patch | 70 + |
115 |
net-misc/dhcp/files/dhcp-3.0.3-dhclient-ntp.patch | 186 + |
116 |
net-misc/dhcp/files/dhcp-3.0.3-libdst.patch | 14 + |
117 |
net-misc/dhcp/files/dhcp-3.0.3-no_isc_blurb.patch | 105 + |
118 |
.../files/dhcp-3.0.4-dhclient-stdin-conf.patch | 83 + |
119 |
.../dhcp/files/dhcp-3.0.5-bpf-nofallback.patch | 44 + |
120 |
.../files/dhcp-3.1.0a1-dhclient-resolvconf.patch | 254 + |
121 |
.../dhcp/files/dhcp-3.1.2_p1-CVE-2009-1892.patch | 12 + |
122 |
.../dhcp/files/dhcp-3.1.3-dhclient-no-down.patch | 77 + |
123 |
net-misc/dhcp/files/dhcp-4.0-dhclient-ntp.patch | 216 + |
124 |
.../files/dhcp-4.0.1-dhclient-stdin-conf.patch | 114 + |
125 |
.../dhcp/files/dhcp-4.2.0-errwarn-message.patch | 31 + |
126 |
net-misc/dhcp/files/dhcp-4.2.0-improved-xid.patch | 138 + |
127 |
net-misc/dhcp/files/dhcp-4.2.0-lpf-ib.patch | 538 ++ |
128 |
net-misc/dhcp/files/dhcp-4.2.0-options.patch | 401 + |
129 |
net-misc/dhcp/files/dhcp-4.2.0-xen-checksum.patch | 245 + |
130 |
.../files/dhcp-4.2.1-dhclient-resolvconf.patch | 384 + |
131 |
net-misc/dhcp/files/dhcp-4.2.1-nogateway.patch | 46 + |
132 |
net-misc/dhcp/files/dhcpd.conf | 29 + |
133 |
net-misc/dhcp/files/dhcpd.init2 | 94 + |
134 |
net-misc/dhcp/files/dhcpd.init3 | 94 + |
135 |
net-misc/dhcp/files/dhcrelay.conf | 13 + |
136 |
net-misc/dhcp/files/dhcrelay.init | 32 + |
137 |
net-misc/dhcp/files/dhcrelay.init2 | 29 + |
138 |
net-misc/dhcp/metadata.xml | 12 + |
139 |
perl-core/encoding-warnings/ChangeLog | 5 +- |
140 |
perl-core/encoding-warnings/Manifest | 14 +- |
141 |
.../encoding-warnings-0.11.ebuild | 3 +- |
142 |
profiles/package.mask | 85 +- |
143 |
sci-astronomy/casacore/ChangeLog | 7 + |
144 |
sci-astronomy/casacore/Manifest | 13 +- |
145 |
.../casacore/casacore-1.2.20110516.ebuild | 2 +- |
146 |
sci-astronomy/eye/ChangeLog | 5 +- |
147 |
sci-astronomy/eye/Manifest | 14 +- |
148 |
sci-astronomy/eye/eye-1.4.1.ebuild | 4 +- |
149 |
sci-astronomy/missfits/ChangeLog | 6 +- |
150 |
sci-astronomy/missfits/Manifest | 16 +- |
151 |
sci-astronomy/missfits/metadata.xml | 7 +- |
152 |
sci-astronomy/missfits/missfits-2.4.0.ebuild | 17 +- |
153 |
sci-astronomy/psfex/Manifest | 10 +- |
154 |
sci-astronomy/psfex/psfex-3.9.1.ebuild | 2 +- |
155 |
sci-astronomy/skymaker/Manifest | 12 +- |
156 |
sci-astronomy/skymaker/skymaker-3.3.3.ebuild | 2 +- |
157 |
sci-astronomy/stuff/Manifest | 12 +- |
158 |
sci-astronomy/stuff/stuff-1.19.ebuild | 2 +- |
159 |
sci-astronomy/weightwatcher/ChangeLog | 6 +- |
160 |
sci-astronomy/weightwatcher/Manifest | 15 +- |
161 |
sci-astronomy/weightwatcher/metadata.xml | 4 +- |
162 |
.../weightwatcher/weightwatcher-1.8.10.ebuild | 17 +- |
163 |
sci-biology/OBO-Edit/ChangeLog | 7 + |
164 |
sci-biology/OBO-Edit/Manifest | 13 +- |
165 |
sci-biology/OBO-Edit/OBO-Edit-2.1_beta8.ebuild | 23 +- |
166 |
sci-biology/ONTO-PERL/ChangeLog | 7 + |
167 |
sci-biology/ONTO-PERL/Manifest | 13 +- |
168 |
sci-biology/ONTO-PERL/ONTO-PERL-1.31.ebuild | 9 +- |
169 |
sci-biology/amos/Manifest | 13 +- |
170 |
sci-biology/apollo/Manifest | 12 +- |
171 |
sci-biology/argo-bin/ChangeLog | 7 + |
172 |
sci-biology/argo-bin/Manifest | 15 +- |
173 |
sci-biology/argo-bin/argo-bin-1.0.31.ebuild | 11 +- |
174 |
sci-biology/argo/Manifest | 14 +- |
175 |
sci-biology/argo/argo-1.0.24.ebuild | 11 +- |
176 |
sci-biology/autoeditor/ChangeLog | 7 + |
177 |
sci-biology/autoeditor/Manifest | 15 +- |
178 |
sci-biology/autoeditor/autoeditor-1.20.ebuild | 25 +- |
179 |
sci-biology/bamtools/ChangeLog | 7 + |
180 |
sci-biology/bamtools/Manifest | 15 +- |
181 |
sci-biology/bamtools/bamtools-9999.ebuild | 4 +- |
182 |
sci-biology/bedtools/ChangeLog | 7 + |
183 |
sci-biology/bedtools/Manifest | 15 +- |
184 |
sci-biology/bedtools/bedtools-2.10.1.ebuild | 18 +- |
185 |
sci-biology/caftools/Manifest | 12 +- |
186 |
sci-biology/cap3-bin/Manifest | 14 +- |
187 |
sci-biology/cap3-bin/cap3-bin-20071221.ebuild | 26 +- |
188 |
sci-biology/clover/Manifest | 42 +- |
189 |
sci-biology/clover/clover-2010.02.19.ebuild | 2 +- |
190 |
sci-biology/clover/metadata.xml | 3 +- |
191 |
sci-biology/codonw/Manifest | 12 +- |
192 |
sci-biology/codonw/codonw-1.4.4-r1.ebuild | 2 +- |
193 |
sci-biology/consed/Manifest | 12 +- |
194 |
sci-biology/consed/consed-20-r1.ebuild | 2 +- |
195 |
sci-biology/dawg/ChangeLog | 5 +- |
196 |
sci-biology/dawg/Manifest | 14 +- |
197 |
sci-biology/dawg/metadata.xml | 2 +- |
198 |
sci-biology/embassy-cbstools/ChangeLog | 4 + |
199 |
sci-biology/embassy-cbstools/Manifest | 12 +- |
200 |
.../embassy-cbstools-1.0.0-r2.ebuild | 2 +- |
201 |
sci-biology/embassy-domainatrix/ChangeLog | 4 + |
202 |
sci-biology/embassy-domainatrix/Manifest | 12 +- |
203 |
.../embassy-domainatrix-0.1.0-r5.ebuild | 2 +- |
204 |
sci-biology/embassy-domalign/ChangeLog | 4 + |
205 |
sci-biology/embassy-domalign/Manifest | 12 +- |
206 |
.../embassy-domalign-0.1.0-r5.ebuild | 2 +- |
207 |
sci-biology/embassy-domsearch/ChangeLog | 4 + |
208 |
sci-biology/embassy-domsearch/Manifest | 12 +- |
209 |
.../embassy-domsearch-0.1.0-r5.ebuild | 2 +- |
210 |
sci-biology/embassy-emnu/ChangeLog | 3 + |
211 |
sci-biology/embassy-emnu/Manifest | 12 +- |
212 |
.../embassy-emnu/embassy-emnu-1.05-r7.ebuild | 2 +- |
213 |
sci-biology/embassy-esim4/ChangeLog | 3 + |
214 |
sci-biology/embassy-esim4/Manifest | 12 +- |
215 |
.../embassy-esim4/embassy-esim4-1.0.0-r7.ebuild | 2 +- |
216 |
sci-biology/embassy-hmmer/ChangeLog | 3 + |
217 |
sci-biology/embassy-hmmer/Manifest | 12 +- |
218 |
.../embassy-hmmer/embassy-hmmer-2.3.2-r4.ebuild | 2 +- |
219 |
sci-biology/embassy-iprscan/ChangeLog | 3 + |
220 |
sci-biology/embassy-iprscan/Manifest | 12 +- |
221 |
.../embassy-iprscan-4.3.1-r2.ebuild | 2 +- |
222 |
sci-biology/embassy-memenew/ChangeLog | 3 + |
223 |
sci-biology/embassy-memenew/Manifest | 12 +- |
224 |
.../embassy-memenew-4.0.0-r1.ebuild | 2 +- |
225 |
sci-biology/embassy-mira/ChangeLog | 3 + |
226 |
sci-biology/embassy-mira/Manifest | 12 +- |
227 |
.../embassy-mira/embassy-mira-2.8.2-r2.ebuild | 2 +- |
228 |
sci-biology/embassy-mse/ChangeLog | 3 + |
229 |
sci-biology/embassy-mse/Manifest | 12 +- |
230 |
sci-biology/embassy-mse/embassy-mse-3.0.0.ebuild | 2 +- |
231 |
sci-biology/embassy-phylipnew/ChangeLog | 3 + |
232 |
sci-biology/embassy-phylipnew/Manifest | 12 +- |
233 |
.../embassy-phylipnew-3.69.ebuild | 2 +- |
234 |
sci-biology/embassy-signature/ChangeLog | 4 + |
235 |
sci-biology/embassy-signature/Manifest | 12 +- |
236 |
.../embassy-signature-0.1.0-r5.ebuild | 2 +- |
237 |
sci-biology/embassy-structure/ChangeLog | 4 + |
238 |
sci-biology/embassy-structure/Manifest | 12 +- |
239 |
.../embassy-structure-0.1.0-r5.ebuild | 2 +- |
240 |
sci-biology/embassy-topo/ChangeLog | 3 + |
241 |
sci-biology/embassy-topo/Manifest | 12 +- |
242 |
sci-biology/embassy-topo/embassy-topo-2.0.0.ebuild | 2 +- |
243 |
sci-biology/embassy-vienna/ChangeLog | 3 + |
244 |
sci-biology/embassy-vienna/Manifest | 12 +- |
245 |
.../embassy-vienna/embassy-vienna-1.7.2-r2.ebuild | 2 +- |
246 |
sci-biology/embassy/ChangeLog | 3 + |
247 |
sci-biology/embassy/Manifest | 12 +- |
248 |
sci-biology/embassy/embassy-6.3.1.ebuild | 2 +- |
249 |
sci-biology/est2uni/Manifest | 16 +- |
250 |
sci-biology/est2uni/est2uni-0.27.ebuild | 20 +- |
251 |
sci-biology/estscan/ChangeLog | 12 + |
252 |
sci-biology/estscan/Manifest | 15 +- |
253 |
sci-biology/estscan/estscan-3.0.3.ebuild | 91 +- |
254 |
sci-biology/estscan/metadata.xml | 1 + |
255 |
sci-biology/gap2caf/Manifest | 12 +- |
256 |
sci-biology/gap2caf/gap2caf-2.1.0.ebuild | 2 +- |
257 |
sci-biology/gbrowse/ChangeLog | 17 +- |
258 |
sci-biology/gbrowse/Manifest | 26 +- |
259 |
.../gbrowse/files/GBrowseInstall.pm-2.26.patch | 72 - |
260 |
....pm-2.33.patch => GBrowseInstall.pm-2.38.patch} | 0 |
261 |
...-disable-gbrowse_metadb_config.pl.pm-2.26.patch | 21 - |
262 |
sci-biology/gbrowse/gbrowse-1.70.ebuild | 68 - |
263 |
sci-biology/gbrowse/gbrowse-2.00.ebuild | 76 - |
264 |
sci-biology/gbrowse/gbrowse-2.26.ebuild | 167 - |
265 |
sci-biology/gbrowse/gbrowse-2.33.ebuild | 158 - |
266 |
sci-biology/gbrowse/gbrowse-2.38.ebuild | 159 + |
267 |
sci-biology/mira/Manifest | 7 +- |
268 |
sci-biology/mira/files/libtool.m4.patch | 13 + |
269 |
sci-biology/mira/mira-3.2.1-r2.ebuild | 1 + |
270 |
sci-biology/mira/mira-3.2.1.17-r1.ebuild | 5 +- |
271 |
sci-biology/mira/mira-3.2.1.18.ebuild | 58 + |
272 |
sci-biology/mrbayes/ChangeLog | 6 +- |
273 |
sci-biology/mrbayes/Manifest | 26 +- |
274 |
sci-biology/mrbayes/metadata.xml | 4 +- |
275 |
sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild | 15 +- |
276 |
sci-biology/newbler/ChangeLog | 7 - |
277 |
sci-biology/newbler/Manifest | 4 - |
278 |
sci-biology/newbler/metadata.xml | 9 - |
279 |
sci-biology/newbler/newbler-2.0.01.10.ebuild | 37 - |
280 |
sci-biology/nrcl/ChangeLog | 14 + |
281 |
sci-biology/nrcl/Manifest | 18 +- |
282 |
sci-biology/nrcl/files/110625-build.patch | 48 + |
283 |
sci-biology/nrcl/nrcl-0.1.ebuild | 39 - |
284 |
sci-biology/nrcl/nrcl-110625.ebuild | 30 + |
285 |
sci-biology/proda/ChangeLog | 5 +- |
286 |
sci-biology/proda/Manifest | 14 +- |
287 |
sci-biology/proda/metadata.xml | 2 +- |
288 |
sci-biology/seqclean/ChangeLog | 10 + |
289 |
sci-biology/seqclean/Manifest | 20 +- |
290 |
.../seqclean/files/seqclean-110625-build.patch | 135 + |
291 |
sci-biology/seqclean/seqclean-0.1.ebuild | 57 - |
292 |
sci-biology/seqclean/seqclean-110625.ebuild | 54 + |
293 |
sci-biology/sequin/ChangeLog | 5 +- |
294 |
sci-biology/sequin/Manifest | 14 +- |
295 |
sci-biology/sequin/metadata.xml | 2 +- |
296 |
sci-biology/sff_dump/ChangeLog | 7 + |
297 |
sci-biology/sff_dump/Manifest | 15 +- |
298 |
sci-biology/sff_dump/sff_dump-1.04.ebuild | 26 +- |
299 |
sci-biology/smalt-bin/ChangeLog | 7 + |
300 |
sci-biology/smalt-bin/Manifest | 13 +- |
301 |
sci-biology/smalt-bin/smalt-bin-0.5.1.ebuild | 26 +- |
302 |
sci-biology/ssaha2-bin/ChangeLog | 7 + |
303 |
sci-biology/ssaha2-bin/Manifest | 13 +- |
304 |
sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild | 41 +- |
305 |
sci-biology/staden/ChangeLog | 16 + |
306 |
sci-biology/staden/Manifest | 15 +- |
307 |
sci-biology/staden/staden-2.0.0_beta8.ebuild | 53 +- |
308 |
sci-biology/staden/staden-9999.ebuild | 54 +- |
309 |
sci-biology/tablet-bin/Manifest | 12 +- |
310 |
.../tablet-bin/tablet-bin-1.11.05.03.ebuild | 2 +- |
311 |
sci-biology/tclust/ChangeLog | 10 + |
312 |
sci-biology/tclust/Manifest | 18 +- |
313 |
sci-biology/tclust/files/tclust-110625-build.patch | 43 + |
314 |
sci-biology/tclust/tclust-0.1.ebuild | 39 - |
315 |
sci-biology/tclust/tclust-110625.ebuild | 30 + |
316 |
sci-biology/tigr-assembler/ChangeLog | 5 +- |
317 |
sci-biology/tigr-assembler/Manifest | 16 +- |
318 |
.../tigr-assembler/tigr-assembler-2.0.ebuild | 5 +- |
319 |
sci-biology/tigr-foundation-libs/ChangeLog | 8 + |
320 |
sci-biology/tigr-foundation-libs/Manifest | 15 +- |
321 |
.../tigr-foundation-libs-2.0-r1.ebuild | 5 +- |
322 |
sci-biology/wcd/ChangeLog | 10 + |
323 |
sci-biology/wcd/Manifest | 17 +- |
324 |
sci-biology/wcd/wcd-0.6.0.ebuild | 52 + |
325 |
sci-biology/wcd/wcd-0.6.0_beta.ebuild | 47 - |
326 |
sci-biology/zmsort/ChangeLog | 10 + |
327 |
sci-biology/zmsort/Manifest | 18 +- |
328 |
sci-biology/zmsort/files/zmsort-110625-build.patch | 41 + |
329 |
sci-biology/zmsort/zmsort-0.1.ebuild | 40 - |
330 |
sci-biology/zmsort/zmsort-110625.ebuild | 30 + |
331 |
sci-chemistry/almost/Manifest | 12 +- |
332 |
sci-chemistry/almost/almost-1.0.3-r2.ebuild | 2 +- |
333 |
sci-chemistry/almost/metadata.xml | 11 +- |
334 |
sci-chemistry/ambertools/ChangeLog | 13 + |
335 |
sci-chemistry/ambertools/Manifest | 20 +- |
336 |
sci-chemistry/ambertools/ambertools-1.4.ebuild | 31 +- |
337 |
sci-chemistry/ambertools/ambertools-1.5.ebuild | 31 +- |
338 |
.../files/ambertools-1.4-bugfix_1-18.patch | 9025 -------------------- |
339 |
.../files/ambertools-1.5-bugfix_1-3.patch | 3831 --------- |
340 |
sci-chemistry/avogadro/ChangeLog | 8 + |
341 |
sci-chemistry/avogadro/Manifest | 23 +- |
342 |
sci-chemistry/avogadro/avogadro-9999.ebuild | 20 +- |
343 |
sci-chemistry/avogadro/metadata.xml | 16 +- |
344 |
sci-chemistry/bist/Manifest | 20 +- |
345 |
sci-chemistry/bist/bist-0.5.1-r1.ebuild | 18 +- |
346 |
sci-chemistry/camshift/Manifest | 10 +- |
347 |
sci-chemistry/camshift/camshift-1.35.0.ebuild | 2 +- |
348 |
sci-chemistry/chooch/Manifest | 22 +- |
349 |
sci-chemistry/chooch/chooch-5.0.2-r1.ebuild | 2 +- |
350 |
sci-chemistry/coot/ChangeLog | 5 + |
351 |
sci-chemistry/coot/Manifest | 17 +- |
352 |
sci-chemistry/coot/coot-9999.ebuild | 48 +- |
353 |
sci-chemistry/coot/files/9999-clipper-config.patch | 17 + |
354 |
sci-chemistry/coot/files/9999-mmdb-config.patch | 18 + |
355 |
sci-chemistry/coot/files/9999-test.patch | 16 + |
356 |
sci-chemistry/coot/metadata.xml | 8 +- |
357 |
sci-chemistry/drawxtl/Manifest | 10 +- |
358 |
sci-chemistry/drawxtl/drawxtl-44.ebuild | 2 +- |
359 |
sci-chemistry/drawxtl/drawxtl-54.ebuild | 2 +- |
360 |
sci-chemistry/gromacs/ChangeLog | 20 + |
361 |
sci-chemistry/gromacs/Manifest | 22 +- |
362 |
sci-chemistry/gromacs/gromacs-4.5.9999.ebuild | 118 +- |
363 |
sci-chemistry/gromacs/gromacs-9999.ebuild | 7 +- |
364 |
sci-chemistry/gromacs/metadata.xml | 7 +- |
365 |
sci-chemistry/icm/ChangeLog | 3 + |
366 |
sci-chemistry/icm/Manifest | 12 +- |
367 |
sci-chemistry/icm/metadata.xml | 14 +- |
368 |
sci-chemistry/jana2000/ChangeLog | 8 +- |
369 |
sci-chemistry/jana2000/Manifest | 12 +- |
370 |
sci-chemistry/jana2000/jana2000-20071218.ebuild | 27 +- |
371 |
sci-chemistry/jligand/ChangeLog | 6 + |
372 |
sci-chemistry/jligand/Manifest | 18 +- |
373 |
sci-chemistry/jligand/jligand-0.1.ebuild | 40 - |
374 |
sci-chemistry/jligand/jligand-1.0.19.ebuild | 37 + |
375 |
sci-chemistry/jligand/jligand-1.0.7.ebuild | 37 - |
376 |
sci-chemistry/jligand/metadata.xml | 8 +- |
377 |
sci-chemistry/jmol/Manifest | 32 +- |
378 |
.../files/{12.0.34 => 12.0.45}/jmol-manifest.patch | 0 |
379 |
.../files/{12.0.34 => 12.0.45}/jmol-nointl.patch | 0 |
380 |
sci-chemistry/jmol/files/jmol-11.6-manifest.patch | 96 - |
381 |
sci-chemistry/jmol/files/jmol-11.6-nointl.patch | 274 - |
382 |
sci-chemistry/jmol/jmol-11.6.ebuild | 119 - |
383 |
...{jmol-12.0.34.ebuild => jmol-12.0.45-r1.ebuild} | 0 |
384 |
sci-chemistry/nmrpipe/ChangeLog | 7 + |
385 |
sci-chemistry/nmrpipe/Manifest | 18 +- |
386 |
....57-lib.patch => 5.91.2011.167.16.39-lib.patch} | 0 |
387 |
.../nmrpipe/nmrpipe-5.91.2011.138.14.57.ebuild | 182 - |
388 |
.../nmrpipe/nmrpipe-5.91.2011.167.16.39.ebuild | 182 + |
389 |
sci-chemistry/phaser/Manifest | 22 +- |
390 |
sci-chemistry/phaser/phaser-2.1.4-r1.ebuild | 2 +- |
391 |
sci-chemistry/phaser/phaser-2.1.4.ebuild | 2 +- |
392 |
sci-chemistry/pymol/Manifest | 8 +- |
393 |
sci-chemistry/pymol/pymol-9999.ebuild | 2 +- |
394 |
sci-chemistry/rosetta/Manifest | 11 +- |
395 |
sci-chemistry/rosetta/rosetta-3.0-r1.ebuild | 4 +- |
396 |
sci-chemistry/rosetta/rosetta-3.0.ebuild | 128 - |
397 |
sci-chemistry/simpson/ChangeLog | 6 +- |
398 |
sci-chemistry/simpson/Manifest | 16 +- |
399 |
sci-chemistry/simpson/metadata.xml | 14 +- |
400 |
sci-chemistry/simpson/simpson-3.0.1.ebuild | 13 +- |
401 |
sci-chemistry/smmp/ChangeLog | 8 +- |
402 |
sci-chemistry/smmp/Manifest | 12 +- |
403 |
sci-chemistry/smmp/smmp-3.0.5.ebuild | 21 +- |
404 |
sci-chemistry/sparta+/ChangeLog | 8 +- |
405 |
sci-chemistry/sparta+/Manifest | 14 +- |
406 |
.../sparta+/sparta+-1.00.2010.0804.14.ebuild | 30 - |
407 |
.../sparta+/sparta+-2.60.2011.167.16.39.ebuild | 28 + |
408 |
sci-chemistry/votca-csg/ChangeLog | 3 + |
409 |
sci-chemistry/votca-csg/Manifest | 14 +- |
410 |
sci-chemistry/votca-csg/votca-csg-9999.ebuild | 4 +- |
411 |
sci-electronics/player/Manifest | 10 +- |
412 |
sci-electronics/player/metadata.xml | 9 +- |
413 |
sci-electronics/player/player-2.0.4.ebuild | 2 +- |
414 |
sci-electronics/tnt/ChangeLog | 6 + |
415 |
sci-electronics/tnt/Manifest | 20 +- |
416 |
sci-electronics/tnt/tnt-1.2.2.ebuild | 25 +- |
417 |
sci-geosciences/pydap_handlers_sql/ChangeLog | 6 +- |
418 |
sci-geosciences/pydap_handlers_sql/Manifest | 16 +- |
419 |
sci-geosciences/pydap_handlers_sql/metadata.xml | 12 +- |
420 |
.../pydap_handlers_sql-0.1.0.ebuild | 13 +- |
421 |
sci-geosciences/qgis/Manifest | 12 +- |
422 |
sci-geosciences/qgis/qgis-9999.ebuild | 2 +- |
423 |
sci-geosciences/tcd-editor/ChangeLog | 8 - |
424 |
sci-geosciences/tcd-editor/Manifest | 4 - |
425 |
sci-geosciences/tcd-editor/metadata.xml | 12 - |
426 |
sci-geosciences/tcd-editor/tcd-editor-1.4.1.ebuild | 32 - |
427 |
sci-libs/Cgraph/Cgraph-2.04.ebuild | 27 +- |
428 |
sci-libs/Cgraph/ChangeLog | 5 +- |
429 |
sci-libs/Cgraph/Manifest | 24 +- |
430 |
sci-libs/bigdft/ChangeLog | 7 + |
431 |
sci-libs/bigdft/Manifest | 15 +- |
432 |
sci-libs/bigdft/bigdft-1.2.0.2.ebuild | 42 +- |
433 |
sci-libs/bigdft/metadata.xml | 9 + |
434 |
sci-libs/cgnsfoam/ChangeLog | 4 + |
435 |
sci-libs/cgnsfoam/Manifest | 16 +- |
436 |
sci-libs/cgnsfoam/cgnsfoam-1732.ebuild | 12 +- |
437 |
sci-libs/cgnsfoam/metadata.xml | 2 +- |
438 |
sci-libs/cgnslib/ChangeLog | 6 + |
439 |
sci-libs/cgnslib/Manifest | 14 +- |
440 |
sci-libs/cgnslib/cgnslib-2.5.4.ebuild | 28 +- |
441 |
sci-libs/cgnstools/Manifest | 12 +- |
442 |
sci-libs/cgnstools/cgnstools-2.5.4-r1.ebuild | 2 +- |
443 |
sci-libs/dcmtk/Manifest | 10 +- |
444 |
sci-libs/dcmtk/dcmtk-3.5.4-r3.ebuild | 2 +- |
445 |
sci-libs/dcmtk/dcmtk-3.5.5_pre20101008.ebuild | 2 +- |
446 |
sci-libs/etsf_io/ChangeLog | 11 + |
447 |
sci-libs/etsf_io/Manifest | 17 +- |
448 |
sci-libs/etsf_io/etsf_io-1.0.3.ebuild | 32 +- |
449 |
sci-libs/etsf_io/metadata.xml | 8 + |
450 |
sci-libs/fftw/ChangeLog | 8 +- |
451 |
sci-libs/fftw/Manifest | 12 +- |
452 |
sci-libs/fftw/fftw-3.3_alpha1.ebuild | 22 +- |
453 |
sci-libs/fgsl/ChangeLog | 14 +- |
454 |
sci-libs/fgsl/Manifest | 16 +- |
455 |
sci-libs/fgsl/fgsl-0.9.3.ebuild | 20 +- |
456 |
sci-libs/fgsl/fgsl-0.9.4.ebuild | 57 + |
457 |
sci-libs/fox/ChangeLog | 7 + |
458 |
sci-libs/fox/Manifest | 17 +- |
459 |
sci-libs/fox/fox-4.0.4.ebuild | 7 +- |
460 |
sci-libs/fox/fox-4.1.0.ebuild | 7 +- |
461 |
sci-libs/fox/metadata.xml | 15 + |
462 |
sci-libs/ghmm/ChangeLog | 7 + |
463 |
sci-libs/ghmm/Manifest | 13 +- |
464 |
sci-libs/ghmm/metadata.xml | 10 +- |
465 |
sci-libs/gmsh/ChangeLog | 8 + |
466 |
sci-libs/gmsh/Manifest | 12 +- |
467 |
sci-libs/gmsh/gmsh-2.5.0.ebuild | 25 +- |
468 |
sci-libs/gmsh/gmsh-9999.ebuild | 73 +- |
469 |
sci-libs/hdf5/ChangeLog | 8 +- |
470 |
sci-libs/hdf5/Manifest | 14 +- |
471 |
sci-libs/hdf5/hdf5-1.8.4-r2.ebuild | 32 +- |
472 |
sci-libs/iml/Manifest | 12 +- |
473 |
sci-libs/iml/iml-1.0.3.ebuild | 2 +- |
474 |
sci-libs/libcmatrix/Manifest | 10 +- |
475 |
sci-libs/libcmatrix/libcmatrix-3.2.1.ebuild | 2 +- |
476 |
sci-libs/libfac/ChangeLog | 6 +- |
477 |
sci-libs/libfac/Manifest | 18 +- |
478 |
sci-libs/libfac/libfac-3.1.0.ebuild | 29 +- |
479 |
sci-libs/libfac/libfac-3.1.1.ebuild | 14 +- |
480 |
sci-libs/libfac/metadata.xml | 15 +- |
481 |
sci-libs/libxc/ChangeLog | 4 + |
482 |
sci-libs/libxc/Manifest | 12 +- |
483 |
sci-libs/libxc/libxc-1.0.ebuild | 14 +- |
484 |
sci-libs/libxc/libxc-9999.ebuild | 14 +- |
485 |
sci-libs/lpsolve/Manifest | 22 +- |
486 |
sci-libs/lpsolve/lpsolve-5.5.2.0.ebuild | 2 +- |
487 |
sci-libs/matio/ChangeLog | 5 +- |
488 |
sci-libs/matio/Manifest | 14 +- |
489 |
sci-libs/matio/matio-1.3.4.ebuild | 4 +- |
490 |
sci-libs/modglue/Manifest | 8 +- |
491 |
sci-libs/modglue/modglue-1.16.ebuild | 2 +- |
492 |
sci-libs/nfft/Manifest | 10 +- |
493 |
sci-libs/nfft/nfft-3.1.3.ebuild | 2 +- |
494 |
sci-libs/omalloc/Manifest | 12 +- |
495 |
sci-libs/omalloc/omalloc-0.9.6.ebuild | 2 +- |
496 |
sci-libs/pagmo/ChangeLog | 11 + |
497 |
sci-libs/pagmo/Manifest | 14 +- |
498 |
sci-libs/pagmo/metadata.xml | 12 + |
499 |
sci-libs/pagmo/pagmo-9999.ebuild | 18 +- |
500 |
sci-libs/pfft/ChangeLog | 5 +- |
501 |
sci-libs/pfft/Manifest | 12 +- |
502 |
sci-libs/pfft/pfft-1.0_alpha1.ebuild | 24 +- |
503 |
sci-libs/votca-tools/ChangeLog | 3 + |
504 |
sci-libs/votca-tools/Manifest | 14 +- |
505 |
sci-libs/votca-tools/votca-tools-9999.ebuild | 2 +- |
506 |
sci-libs/wannier90/ChangeLog | 4 + |
507 |
sci-libs/wannier90/Manifest | 15 +- |
508 |
{app-text/dgs => sci-libs/wannier90}/metadata.xml | 0 |
509 |
sci-libs/wannier90/wannier90-1.2.ebuild | 23 +- |
510 |
sci-mathematics/acl2/ChangeLog | 5 +- |
511 |
sci-mathematics/acl2/Manifest | 15 +- |
512 |
sci-mathematics/acl2/acl2-4.2.ebuild | 10 +- |
513 |
sci-mathematics/algae/ChangeLog | 9 +- |
514 |
sci-mathematics/algae/Manifest | 16 +- |
515 |
sci-mathematics/algae/algae-4.3.6.ebuild | 73 +- |
516 |
sci-mathematics/algae/metadata.xml | 1 + |
517 |
sci-mathematics/aribas/ChangeLog | 5 +- |
518 |
sci-mathematics/aribas/Manifest | 14 +- |
519 |
sci-mathematics/aribas/aribas-1.63.ebuild | 21 +- |
520 |
sci-mathematics/axiom/ChangeLog | 6 +- |
521 |
sci-mathematics/axiom/Manifest | 16 +- |
522 |
sci-mathematics/axiom/axiom-201009.ebuild | 12 +- |
523 |
sci-mathematics/axiom/metadata.xml | 2 +- |
524 |
sci-mathematics/cipi/ChangeLog | 8 +- |
525 |
sci-mathematics/cipi/Manifest | 16 +- |
526 |
sci-mathematics/cipi/cipi-1.0.ebuild | 24 +- |
527 |
sci-mathematics/cipi/metadata.xml | 12 +- |
528 |
sci-mathematics/flocq/ChangeLog | 3 + |
529 |
sci-mathematics/flocq/Manifest | 14 +- |
530 |
sci-mathematics/flocq/flocq-1.4.0.ebuild | 15 +- |
531 |
sci-mathematics/freefem++/Manifest | 12 +- |
532 |
sci-mathematics/freefem++/freefem++-3.5.ebuild | 2 +- |
533 |
sci-mathematics/freefem++/freefem++-3.8.ebuild | 2 +- |
534 |
sci-mathematics/gambit/ChangeLog | 6 +- |
535 |
sci-mathematics/gambit/Manifest | 16 +- |
536 |
sci-mathematics/gambit/gambit-0.2010.09.01.ebuild | 44 +- |
537 |
sci-mathematics/gambit/metadata.xml | 16 +- |
538 |
sci-mathematics/gap/ChangeLog | 7 +- |
539 |
sci-mathematics/gap/Manifest | 16 +- |
540 |
sci-mathematics/gap/gap-4.4.12.ebuild | 30 +- |
541 |
sci-mathematics/gap/metadata.xml | 13 +- |
542 |
sci-mathematics/gappa/ChangeLog | 6 + |
543 |
sci-mathematics/gappa/Manifest | 16 +- |
544 |
sci-mathematics/gappa/gappa-0.14.0.ebuild | 56 - |
545 |
sci-mathematics/gappa/gappa-0.15.0.ebuild | 56 + |
546 |
sci-mathematics/gappalib-coq/ChangeLog | 8 +- |
547 |
sci-mathematics/gappalib-coq/Manifest | 16 +- |
548 |
.../gappalib-coq/gappalib-coq-0.14.1.ebuild | 34 - |
549 |
.../gappalib-coq/gappalib-coq-0.16.0.ebuild | 33 + |
550 |
sci-mathematics/giac/ChangeLog | 5 +- |
551 |
sci-mathematics/giac/Manifest | 14 +- |
552 |
sci-mathematics/giac/giac-0.9.2.ebuild | 41 +- |
553 |
sci-mathematics/hypre/ChangeLog | 4 + |
554 |
sci-mathematics/hypre/Manifest | 16 +- |
555 |
sci-mathematics/hypre/hypre-2.6.0b.ebuild | 2 +- |
556 |
sci-mathematics/hypre/hypre-2.7.0b.ebuild | 2 +- |
557 |
sci-mathematics/lattE-macchiato/Manifest | 20 +- |
558 |
.../lattE-macchiato/lattE-macchiato-0.9.3.ebuild | 2 +- |
559 |
sci-mathematics/netgen/Manifest | 8 +- |
560 |
sci-mathematics/netgen/netgen-4.9.13.ebuild | 4 +- |
561 |
sci-mathematics/normaliz/ChangeLog | 6 +- |
562 |
sci-mathematics/normaliz/Manifest | 16 +- |
563 |
sci-mathematics/normaliz/metadata.xml | 16 +- |
564 |
sci-mathematics/normaliz/normaliz-2.2.ebuild | 13 +- |
565 |
sci-mathematics/pest/ChangeLog | 5 +- |
566 |
sci-mathematics/pest/Manifest | 12 +- |
567 |
sci-mathematics/pest/pest-12.1.ebuild | 24 +- |
568 |
sci-mathematics/petsc/ChangeLog | 5 + |
569 |
sci-mathematics/petsc/Manifest | 24 +- |
570 |
sci-mathematics/petsc/metadata.xml | 1 + |
571 |
sci-mathematics/petsc/petsc-3.1_p4.ebuild | 6 +- |
572 |
sci-mathematics/petsc/petsc-3.1_p5-r2.ebuild | 6 +- |
573 |
sci-mathematics/petsc/petsc-3.1_p7.ebuild | 4 +- |
574 |
sci-mathematics/petsc/petsc-3.1_p8-r1.ebuild | 14 +- |
575 |
sci-mathematics/petsc/petsc-3.1_p8.ebuild | 4 +- |
576 |
sci-mathematics/pff/ChangeLog | 5 +- |
577 |
sci-mathematics/pff/Manifest | 14 +- |
578 |
sci-mathematics/pff/pff-8.2.1.2.ebuild | 18 +- |
579 |
sci-mathematics/scilab/ChangeLog | 4 + |
580 |
sci-mathematics/scilab/Manifest | 8 +- |
581 |
...lib-fix.patch => scilab-5.3.2-scilib-fix.patch} | 0 |
582 |
sci-mathematics/scilab/scilab-5.2.1.ebuild | 4 +- |
583 |
sci-mathematics/scilab/scilab-5.3.2.ebuild | 6 +- |
584 |
sci-mathematics/why/ChangeLog | 3 + |
585 |
sci-mathematics/why/Manifest | 14 +- |
586 |
sci-mathematics/why/why-2.29.ebuild | 46 +- |
587 |
sci-mathematics/yorick/Manifest | 12 +- |
588 |
sci-mathematics/yorick/yorick-2.1.06.ebuild | 2 +- |
589 |
sci-misc/emu/ChangeLog | 9 - |
590 |
sci-misc/emu/Manifest | 4 - |
591 |
sci-misc/emu/emu-1.10.ebuild | 60 - |
592 |
sci-misc/emu/metadata.xml | 14 - |
593 |
sci-misc/finomaton/ChangeLog | 5 +- |
594 |
sci-misc/finomaton/Manifest | 22 +- |
595 |
sci-misc/finomaton/finomaton-1.0.ebuild | 11 +- |
596 |
sci-misc/foma/ChangeLog | 4 + |
597 |
sci-misc/foma/Manifest | 20 +- |
598 |
sci-misc/foma/foma-0.9.14_alpha.ebuild | 37 +- |
599 |
sci-misc/foma/foma-0.9.1_alpha.ebuild | 33 - |
600 |
sci-misc/foma/foma-0.9.4_alpha.ebuild | 39 - |
601 |
sci-misc/foma/metadata.xml | 8 +- |
602 |
sci-misc/hfst/ChangeLog | 4 + |
603 |
sci-misc/hfst/Manifest | 16 +- |
604 |
sci-misc/hfst/hfst-2.2.ebuild | 15 +- |
605 |
sci-misc/hfst/hfst-3.0.2.ebuild | 26 +- |
606 |
sci-misc/jwnl/Manifest | 20 +- |
607 |
sci-misc/jwnl/jwnl-1.3_rc3.ebuild | 2 +- |
608 |
sci-misc/nco/.#Manifest.1.21 | 6 - |
609 |
sci-misc/nco/Manifest | 2 +- |
610 |
sci-misc/nco/nco-4.0.7.ebuild | 6 +- |
611 |
sci-misc/nltk/ChangeLog | 8 +- |
612 |
sci-misc/nltk/Manifest | 29 +- |
613 |
sci-misc/nltk/metadata.xml | 10 +- |
614 |
sci-misc/nltk/nltk-0.9.5.ebuild | 40 - |
615 |
sci-misc/nltk/nltk-2.0.1_rc1.ebuild | 32 + |
616 |
sci-misc/openfst/Manifest | 16 +- |
617 |
sci-misc/openfst/openfst-1.2.7.ebuild | 2 +- |
618 |
sci-misc/opennlp-tools/ChangeLog | 6 +- |
619 |
sci-misc/opennlp-tools/Manifest | 16 +- |
620 |
sci-misc/opennlp-tools/metadata.xml | 13 +- |
621 |
sci-misc/opennlp-tools/opennlp-tools-1.3.0.ebuild | 13 +- |
622 |
sci-misc/praat/ChangeLog | 6 +- |
623 |
sci-misc/praat/Manifest | 22 +- |
624 |
sci-misc/praat/metadata.xml | 9 +- |
625 |
sci-misc/praat/praat-5.0.38.ebuild | 49 - |
626 |
sci-misc/praat/praat-5.0.45.ebuild | 51 - |
627 |
sci-misc/praat/praat-5.1.00.ebuild | 23 +- |
628 |
sci-misc/praat/praat-5.1.15.ebuild | 23 +- |
629 |
sci-misc/salome-med/Manifest | 10 +- |
630 |
sci-misc/salome-med/salome-med-5.1.3.ebuild | 2 +- |
631 |
sci-misc/salome-med/salome-med-5.1.4.ebuild | 2 +- |
632 |
sci-misc/sfst/ChangeLog | 4 + |
633 |
sci-misc/sfst/Manifest | 26 +- |
634 |
sci-misc/sfst/metadata.xml | 12 +- |
635 |
sci-misc/sfst/sfst-1.1.ebuild | 75 - |
636 |
sci-misc/sfst/sfst-1.2.ebuild | 77 - |
637 |
sci-misc/sfst/sfst-1.3.ebuild | 78 - |
638 |
sci-misc/sfst/sfst-1.4.2.ebuild | 41 +- |
639 |
sci-physics/abinit/ChangeLog | 19 + |
640 |
sci-physics/abinit/Manifest | 8 +- |
641 |
sci-physics/abinit/abinit-6.6.2.ebuild | 214 - |
642 |
sci-physics/abinit/abinit-6.6.3.ebuild | 24 +- |
643 |
sci-physics/abinit/abinit-6.8.1.ebuild | 196 + |
644 |
sci-physics/atompaw/ChangeLog | 4 + |
645 |
sci-physics/atompaw/Manifest | 15 +- |
646 |
sci-physics/atompaw/atompaw-3.0.1.ebuild | 22 +- |
647 |
sci-physics/atompaw/metadata.xml | 9 + |
648 |
sci-physics/atompaw2abinit/ChangeLog | 4 + |
649 |
sci-physics/atompaw2abinit/Manifest | 17 +- |
650 |
.../atompaw2abinit/atompaw2abinit-3.3.0.ebuild | 18 +- |
651 |
.../atompaw2abinit}/metadata.xml | 0 |
652 |
sci-physics/espresso/ChangeLog | 7 + |
653 |
sci-physics/espresso/Manifest | 20 +- |
654 |
sci-physics/espresso/espresso-9999.ebuild | 14 +- |
655 |
sci-physics/espresso/metadata.xml | 4 +- |
656 |
sci-physics/qcl/Manifest | 12 +- |
657 |
sci-physics/qcl/qcl-0.6.3-r1.ebuild | 2 +- |
658 |
sci-visualization/ferret-bin/Manifest | 12 +- |
659 |
.../ferret-bin/ferret-bin-6.6.4.ebuild | 2 +- |
660 |
sci-visualization/gri/Manifest | 12 +- |
661 |
sci-visualization/gri/gri-2.12.22.ebuild | 2 +- |
662 |
sci-visualization/paraview/Manifest | 14 +- |
663 |
sci-visualization/paraview/paraview-3.10.1.ebuild | 4 +- |
664 |
sci-visualization/paraview/paraview-3.8.1.ebuild | 4 +- |
665 |
sci-visualization/v_sim/Manifest | 16 +- |
666 |
sci-visualization/v_sim/v_sim-3.5.1.ebuild | 2 +- |
667 |
sci-visualization/v_sim/v_sim-3.5.2.ebuild | 2 +- |
668 |
sci-visualization/v_sim/v_sim-3.6.0.ebuild | 2 +- |
669 |
sci-visualization/vtkPOFFReader/Manifest | 12 +- |
670 |
.../vtkPOFFReader/vtkPOFFReader-300.ebuild | 2 +- |
671 |
sys-cluster/classads/ChangeLog | 5 +- |
672 |
sys-cluster/classads/Manifest | 14 +- |
673 |
sys-cluster/classads/metadata.xml | 10 +- |
674 |
sys-cluster/condor/Manifest | 16 +- |
675 |
sys-cluster/condor/condor-7.5.2.ebuild | 2 +- |
676 |
sys-cluster/condor/condor-7.5.4.ebuild | 2 +- |
677 |
sys-cluster/condor/metadata.xml | 22 +- |
678 |
sys-cluster/ganglia_jobmonarch/Manifest | 26 + |
679 |
.../ganglia_jobmonarch/files/job_monarch_link.sh | 64 + |
680 |
.../ganglia_jobmonarch/files/jobarchived.initd | 28 + |
681 |
sys-cluster/ganglia_jobmonarch/files/jobmond.initd | 28 + |
682 |
.../ganglia_jobmonarch-0.3.1.ebuild | 76 + |
683 |
sys-cluster/ganglia_jobmonarch/metadata.xml | 5 + |
684 |
sys-cluster/mpe2/ChangeLog | 5 +- |
685 |
sys-cluster/mpe2/Manifest | 12 +- |
686 |
sys-cluster/mpe2/mpe2-1.0.6_p1.ebuild | 8 +- |
687 |
sys-cluster/mpich2/ChangeLog | 4 + |
688 |
sys-cluster/mpich2/Manifest | 12 +- |
689 |
sys-cluster/mpich2/mpich2-1.2.1_p1-r2.ebuild | 5 +- |
690 |
sys-cluster/mpich2/mpich2-1.4_rc2-r1.ebuild | 5 +- |
691 |
sys-cluster/nullmpi/ChangeLog | 7 + |
692 |
sys-cluster/nullmpi/Manifest | 18 +- |
693 |
sys-cluster/nullmpi/metadata.xml | 2 +- |
694 |
sys-cluster/nullmpi/nullmpi-0.7.ebuild | 7 +- |
695 |
sys-cluster/nullmpi/nullmpi-9999.ebuild | 17 +- |
696 |
sys-cluster/openmpi/ChangeLog | 3 + |
697 |
sys-cluster/openmpi/Manifest | 10 +- |
698 |
sys-cluster/openmpi/openmpi-1.5.3.ebuild | 7 +- |
699 |
sys-cluster/scalasca/ChangeLog | 3 + |
700 |
sys-cluster/scalasca/Manifest | 14 +- |
701 |
sys-cluster/scalasca/scalasca-1.3.3.ebuild | 2 +- |
702 |
sys-devel/spl/Manifest | 22 +- |
703 |
sys-devel/spl/spl-0.6.0_rc4.ebuild | 2 +- |
704 |
sys-devel/spl/spl-9999.ebuild | 2 +- |
705 |
sys-devel/ucpp/Manifest | 10 +- |
706 |
sys-devel/ucpp/ucpp-1.3.ebuild | 2 +- |
707 |
sys-fs/ocfs2-tools/ChangeLog | 11 - |
708 |
sys-fs/ocfs2-tools/Manifest | 18 +- |
709 |
sys-fs/ocfs2-tools/files/INSTALL.GENTOO | 103 - |
710 |
sys-fs/ocfs2-tools/files/gcc45-ftbfs.patch | 21 - |
711 |
sys-fs/ocfs2-tools/files/ocfs2.conf | 20 - |
712 |
sys-fs/ocfs2-tools/files/ocfs2.init | 7 +- |
713 |
sys-fs/ocfs2-tools/metadata.xml | 3 + |
714 |
sys-fs/ocfs2-tools/ocfs2-tools-1.4.4.ebuild | 73 - |
715 |
sys-fs/ocfs2-tools/ocfs2-tools-1.6.4.ebuild | 60 + |
716 |
sys-fs/zfs/Manifest | 20 +- |
717 |
sys-fs/zfs/zfs-0.6.0_rc4.ebuild | 2 +- |
718 |
sys-infiniband/libsdp/ChangeLog | 6 +- |
719 |
sys-infiniband/libsdp/Manifest | 18 +- |
720 |
sys-infiniband/libsdp/libsdp-1.1.99-r1.ebuild | 14 +- |
721 |
sys-infiniband/libsdp/libsdp-1.1.99.ebuild | 15 +- |
722 |
sys-infiniband/libsdp/metadata.xml | 4 +- |
723 |
sys-infiniband/openib-diags/ChangeLog | 7 +- |
724 |
sys-infiniband/openib-diags/Manifest | 18 +- |
725 |
sys-infiniband/openib-diags/metadata.xml | 4 +- |
726 |
.../openib-diags-1.4.4_p20081207.ebuild | 20 +- |
727 |
.../openib-diags-1.4.4_p20090314.ebuild | 19 +- |
728 |
sys-infiniband/openib-drivers/Manifest | 16 +- |
729 |
sys-infiniband/openib-drivers/metadata.xml | 19 +- |
730 |
.../openib-drivers/openib-drivers-1.2.5.1.ebuild | 4 +- |
731 |
.../openib-drivers/openib-drivers-1.2.5.5.ebuild | 4 +- |
732 |
sys-infiniband/openib-files/Manifest | 16 +- |
733 |
sys-infiniband/openib-files/metadata.xml | 13 +- |
734 |
.../openib-files/openib-files-1.2.5.5.ebuild | 2 +- |
735 |
.../openib-files/openib-files-1.4.1.ebuild | 2 +- |
736 |
.../openib-files/openib-files-1.4.ebuild | 2 +- |
737 |
sys-infiniband/openib-mvapich2/ChangeLog | 12 +- |
738 |
sys-infiniband/openib-mvapich2/Manifest | 22 +- |
739 |
sys-infiniband/openib-mvapich2/metadata.xml | 10 +- |
740 |
.../openib-mvapich2/openib-mvapich2-0.9.5.ebuild | 31 +- |
741 |
.../openib-mvapich2/openib-mvapich2-0.9.6.ebuild | 31 +- |
742 |
.../openib-mvapich2-1.0.1-r1.ebuild | 30 +- |
743 |
.../openib-mvapich2/openib-mvapich2-1.0.1.ebuild | 35 +- |
744 |
.../openib-mvapich2/openib-mvapich2-1.0.ebuild | 35 +- |
745 |
sys-infiniband/openib-osm/ChangeLog | 7 +- |
746 |
sys-infiniband/openib-osm/Manifest | 18 +- |
747 |
sys-infiniband/openib-osm/metadata.xml | 4 +- |
748 |
.../openib-osm/openib-osm-3.2.5_p20081207.ebuild | 17 +- |
749 |
.../openib-osm/openib-osm-3.2.6_p20090317.ebuild | 16 +- |
750 |
sys-infiniband/openib-perf/ChangeLog | 8 +- |
751 |
sys-infiniband/openib-perf/Manifest | 16 +- |
752 |
sys-infiniband/openib-perf/metadata.xml | 4 +- |
753 |
sys-infiniband/openib-perf/openib-perf-1.2.ebuild | 16 +- |
754 |
sys-infiniband/openib-srptools/ChangeLog | 6 +- |
755 |
sys-infiniband/openib-srptools/Manifest | 26 +- |
756 |
sys-infiniband/openib-srptools/metadata.xml | 4 +- |
757 |
.../openib-srptools/openib-srptools-1.1.ebuild | 26 +- |
758 |
sys-infiniband/openib-userspace/Manifest | 18 +- |
759 |
sys-infiniband/openib-userspace/metadata.xml | 15 +- |
760 |
.../openib-userspace-1.2.5.1-r1.ebuild | 71 +- |
761 |
.../openib-userspace-1.2.5.5.ebuild | 67 +- |
762 |
.../openib-userspace/openib-userspace-1.2.ebuild | 69 +- |
763 |
sys-infiniband/openib/Manifest | 16 +- |
764 |
sys-infiniband/openib/metadata.xml | 14 +- |
765 |
sys-infiniband/openib/openib-1.4.1.ebuild | 7 +- |
766 |
sys-infiniband/openib/openib-1.4.ebuild | 7 +- |
767 |
sys-kernel/cluster-sources/ChangeLog | 7 + |
768 |
sys-kernel/cluster-sources/Manifest | 17 + |
769 |
.../cluster-sources/cluster-sources-2.6.39.ebuild | 35 + |
770 |
sys-kernel/cluster-sources/metadata.xml | 9 + |
771 |
x11-libs/xview/ChangeLog | 5 +- |
772 |
x11-libs/xview/Manifest | 12 +- |
773 |
x11-libs/xview/metadata.xml | 11 +- |
774 |
760 files changed, 10806 insertions(+), 19143 deletions(-) |
775 |
|
776 |
diff --cc dev-java/jgraphx/ChangeLog |
777 |
index db63fbc,db63fbc..6cc153d |
778 |
--- a/dev-java/jgraphx/ChangeLog |
779 |
+++ b/dev-java/jgraphx/ChangeLog |
780 |
@@@ -1,7 -1,7 +1,13 @@@ |
781 |
# ChangeLog for dev-java/jgraphx |
782 |
--# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
783 |
++# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
784 |
# $Header: $ |
785 |
|
786 |
++*jgraphx-1.4.1.0 (30 Jun 2011) |
787 |
++ |
788 |
++ 30 Jun 2011; Guillaume Horel <guillaume.horel@×××××.com> |
789 |
++ +jgraphx-1.4.1.0.ebuild: |
790 |
++ Version 1.4.1.0 is specifically required by scilab |
791 |
++ |
792 |
*jgraphx-1.4.1.2 (06 Oct 2010) |
793 |
|
794 |
06 Oct 2010; Thomas Kahle <tom111@×××.de> +jgraphx-1.4.1.2.ebuild: |
795 |
diff --cc dev-java/jgraphx/jgraphx-1.4.1.0.ebuild |
796 |
index 0000000,9fe1ad9..5813fb7 |
797 |
mode 000000,100644..100644 |
798 |
--- a/dev-java/jgraphx/jgraphx-1.4.1.0.ebuild |
799 |
+++ b/dev-java/jgraphx/jgraphx-1.4.1.0.ebuild |
800 |
@@@ -1,0 -1,42 +1,42 @@@ |
801 |
-# Copyright 1999-2010 Gentoo Foundation |
802 |
++# Copyright 1999-2011 Gentoo Foundation |
803 |
+ # Distributed under the terms of the GNU General Public License v2 |
804 |
+ # $Header: $ |
805 |
+ |
806 |
+ JAVA_PKG_IUSE="doc source" |
807 |
+ EAPI=2 |
808 |
+ inherit java-pkg-2 java-ant-2 versionator |
809 |
+ |
810 |
+ MY_PV=$(replace_all_version_separators '_') |
811 |
+ |
812 |
+ DESCRIPTION="Open-source graph component for Java" |
813 |
+ SRC_URI="http://www.jgraph.com/downloads/jgraphx/archive/${PN}-${MY_PV}.zip\ |
814 |
+ -> ${P}.zip" |
815 |
+ HOMEPAGE="http://www.jgraph.com" |
816 |
+ IUSE="doc examples source" |
817 |
+ DEPEND=">=virtual/jdk-1.5 |
818 |
+ app-arch/unzip" |
819 |
+ RDEPEND=">=virtual/jre-1.5" |
820 |
+ LICENSE="as-is" |
821 |
+ SLOT="0" |
822 |
+ KEYWORDS="~amd64 ~x86" |
823 |
+ |
824 |
+ S="${WORKDIR}/${PN}" |
825 |
+ |
826 |
+ src_prepare() { |
827 |
+ # don't do javadoc always |
828 |
+ sed -i \ |
829 |
+ -e 's/depends="doc"/depends="compile"/' \ |
830 |
+ build.xml || die "sed failed" |
831 |
+ rm -rf doc/api lib/jgraphx.jar || die |
832 |
+ } |
833 |
+ |
834 |
+ EANT_BUILD_TARGET="build" |
835 |
+ EANT_DOC_TARGET="doc" |
836 |
+ |
837 |
+ src_install() { |
838 |
+ java-pkg_dojar lib/${PN}.jar |
839 |
+ |
840 |
+ use doc && java-pkg_dojavadoc docs/api |
841 |
+ use source && java-pkg_dosrc src/org |
842 |
+ use examples && java-pkg_doexamples examples |
843 |
+ } |
844 |
diff --cc sci-mathematics/scilab/Manifest |
845 |
index 2888885,bd21f5c..c20fba9 |
846 |
--- a/sci-mathematics/scilab/Manifest |
847 |
+++ b/sci-mathematics/scilab/Manifest |
848 |
@@@ -17,7 -17,7 +17,7 @@@ AUX scilab-5.3.2-scilib-fix.patch 368 R |
849 |
AUX sparc64.diff 1011 RMD160 86849042292bcd7a195e6745bb06d84fbe4af3e5 SHA1 602a3e3a9c8551e043f66d1cf81dcdd3292b7f0e SHA256 1c309296a003edfbb917df3e2948df117bc02b79c421232e971d14a966a25af6 |
850 |
DIST scilab-5.2.1-src.tar.gz 54855137 RMD160 312ccc62f44bc3dbf8f25260a7090f62dc70818e SHA1 6fad986beb03a42cee6e8ef9bfa0b8976236b3f6 SHA256 f85aa3b7fde0e523f7f0159613da7cca7bd2d125860b50fa2ed00394c97075e0 |
851 |
DIST scilab-5.3.2-src.tar.gz 47356102 RMD160 18cff3bbf0dd7e901de8879355b243c4c16fe9fb SHA1 c0d7a7db6ea3a6a35722b451c6ef99b799079896 SHA256 6b33aace70b0889a71a417a28530ff58b96042ea35cb033c37bb1ac7c9a4ec15 |
852 |
- EBUILD scilab-5.2.1.ebuild 3626 RMD160 425cc158c8cce598e63b8fd3baeb3086e3672f96 SHA1 c9085fcd5f99fa7ea18483f4adcb8a60cb806863 SHA256 befb38c6998a6b44d2443d0dcbc6ab1d13da7d129f4676700bb789fe168ab896 |
853 |
- EBUILD scilab-5.3.2.ebuild 3437 RMD160 dbbe08c188945038c3f07cfff7e6533fe4547454 SHA1 cbaa22f8481955afb70bb89d4bf64029512490e6 SHA256 279d269f406cf73dc9ccd6456b36875ff929b12fcf16071659f929bfaab3a4b4 |
854 |
- MISC ChangeLog 2514 RMD160 045e14cc047c6e931fece9200e2bb9662e9a10a3 SHA1 636ed9672bc662ba7fa037b47c240dec4d67bfd9 SHA256 ecd7394bb0c46c79544ca6d8fe0d43c7b3e3e4e55045850a23f4b4710c639852 |
855 |
+ EBUILD scilab-5.2.1.ebuild 3626 RMD160 e712ac5b2300982cc328523d7cbc5f10d8647c3b SHA1 315888f4e31bd868412a830da031117b65c6a542 SHA256 d9dc4d7085bff7953e854895ed24ce9573e1e744e6659284cad68f67d4c8025c |
856 |
-EBUILD scilab-5.3.2.ebuild 3415 RMD160 6bc15d60faf34e6bc480267aaaa991995f24d0a6 SHA1 3a4df5ad24b3ada1fd37fd2a9f9f05b2601aa767 SHA256 fe35062efd4b020508c80f787622dda60def9f8183ae886020bfa7352629e57d |
857 |
++EBUILD scilab-5.3.2.ebuild 3431 RMD160 29eaca323817257ff15cfd1322502b31d4e95ea4 SHA1 2c98cda4bce89ab3e55fff02d24671f401f84c44 SHA256 76124c45f5b5e72c268acc42f65a55d2aef5fc537a25803368dcd491b885bf08 |
858 |
+ MISC ChangeLog 2632 RMD160 1d85f0d807ba3405930c6d2ab47fc0d288d5ae8d SHA1 5b1261d3469dcc3eb817e920a16a3b8bfbb92b9e SHA256 01c833c3328e7b2376cef74575035f046582169b66eaed76caca9a126c7688b3 |
859 |
MISC metadata.xml 872 RMD160 aef8847644f734faba3b42b9028690664612c8e6 SHA1 4686ca608887e1d9fea6ee4e11f4aa54c8eff150 SHA256 43da74dcf0ae13eb0987c33f397a9b9d7abe187196107d50814a3104466b90ee |
860 |
diff --cc sci-mathematics/scilab/scilab-5.3.2.ebuild |
861 |
index 295c30f,1c3f40e..1a6db48 |
862 |
--- a/sci-mathematics/scilab/scilab-5.3.2.ebuild |
863 |
+++ b/sci-mathematics/scilab/scilab-5.3.2.ebuild |
864 |
@@@ -29,7 -28,7 +29,7 @@@ RDEPEND="virtual/lapac |
865 |
>=dev-java/flexdock-0.5.2 |
866 |
>=dev-java/jeuclid-core-3.1 |
867 |
>=dev-java/jlatexmath-0.9.4 |
868 |
-- =dev-java/jgraphx-1.4.1* |
869 |
++ =dev-java/jgraphx-1.4.1.0 |
870 |
dev-java/jogl |
871 |
dev-java/jgoodies-looks |
872 |
dev-java/jrosetta |
873 |
@@@ -101,7 -100,7 +101,7 @@@ src_configure() |
874 |
$(use_with matio) \ |
875 |
$(use_with umfpack) \ |
876 |
$(use_with tk) \ |
877 |
-- $(use_with xcos scicos) \ |
878 |
++ $(use_with xcos) \ |
879 |
${myopts} |
880 |
} |