| 1 |
commit: b1a4da34a7aba6ff9286adf75eb2871b85331ce1 |
| 2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 3 |
AuthorDate: Mon Mar 5 07:35:27 2012 +0000 |
| 4 |
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Mon Mar 5 07:35:27 2012 +0000 |
| 6 |
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b1a4da34 |
| 7 |
|
| 8 |
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci |
| 9 |
|
| 10 |
* 'master' of git+ssh://git.overlays.gentoo.org/proj/sci: (28 commits) |
| 11 |
added superlu on activated hypre flag |
| 12 |
got sparse flag working |
| 13 |
disabled non-working dependencies |
| 14 |
Moved to tree |
| 15 |
moved to tree |
| 16 |
fixed undefined reference when using afterimage |
| 17 |
Moved to tree |
| 18 |
Block pypy usage |
| 19 |
Added sci-libs/libsufr-0.3.2 |
| 20 |
removed obsolete call to env-update |
| 21 |
reworked fortran and openmp support |
| 22 |
sci-chemistry/ambertools: Add another buffer overflow patch |
| 23 |
fixed disable X option and use deps |
| 24 |
sci-chemistry/ambertools: Add bugfixes 22-27 |
| 25 |
sci-libs/lemon: added a note how to eventually create a shared library |
| 26 |
added optional boost and afterimage dep |
| 27 |
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci |
| 28 |
sci-libs/inchi: Version bump, new licence |
| 29 |
further simplification, added more optional deps |
| 30 |
fixed banned dosed, added more comments |
| 31 |
... |
| 32 |
|
| 33 |
* github.com:gentoo-science/sci: (28 commits) |
| 34 |
added superlu on activated hypre flag |
| 35 |
got sparse flag working |
| 36 |
disabled non-working dependencies |
| 37 |
Moved to tree |
| 38 |
moved to tree |
| 39 |
fixed undefined reference when using afterimage |
| 40 |
Moved to tree |
| 41 |
Block pypy usage |
| 42 |
Added sci-libs/libsufr-0.3.2 |
| 43 |
removed obsolete call to env-update |
| 44 |
reworked fortran and openmp support |
| 45 |
sci-chemistry/ambertools: Add another buffer overflow patch |
| 46 |
fixed disable X option and use deps |
| 47 |
sci-chemistry/ambertools: Add bugfixes 22-27 |
| 48 |
sci-libs/lemon: added a note how to eventually create a shared library |
| 49 |
added optional boost and afterimage dep |
| 50 |
Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci |
| 51 |
sci-libs/inchi: Version bump, new licence |
| 52 |
further simplification, added more optional deps |
| 53 |
fixed banned dosed, added more comments |
| 54 |
... |
| 55 |
|
| 56 |
|
| 57 |
media-gfx/PhiloGL/Manifest | 2 +- |
| 58 |
.../{PhiloGL-1.4.2.ebuild => PhiloGL-1.4.3.ebuild} | 0 |
| 59 |
sci-biology/cufflinks/ChangeLog | 10 + |
| 60 |
sci-biology/cufflinks/Manifest | 1 + |
| 61 |
sci-biology/cufflinks/cufflinks-1.3.0.ebuild | 20 + |
| 62 |
.../cufflinks}/metadata.xml | 0 |
| 63 |
sci-biology/cutadapt/ChangeLog | 10 + |
| 64 |
sci-biology/cutadapt/Manifest | 1 + |
| 65 |
sci-biology/cutadapt/cutadapt-1.0.ebuild | 21 + |
| 66 |
.../cutadapt}/metadata.xml | 0 |
| 67 |
sci-biology/phylobayes/ChangeLog | 10 + |
| 68 |
sci-biology/phylobayes/Manifest | 2 + |
| 69 |
.../phylobayes}/metadata.xml | 0 |
| 70 |
sci-biology/phylobayes/phylobayes-3.3b.ebuild | 37 + |
| 71 |
sci-chemistry/ambertools/ChangeLog | 12 +- |
| 72 |
...ools-1.5-r2.ebuild => ambertools-1.5-r3.ebuild} | 6 +- |
| 73 |
.../files/ambertools-1.5-bugfix_22-27.patch | 3343 ++++++++++++++++++++ |
| 74 |
.../ambertools/files/ambertools-1.5-overflow.patch | 30 + |
| 75 |
sci-chemistry/gromacs/ChangeLog | 10 + |
| 76 |
sci-chemistry/gromacs/gromacs-4.5.9999.ebuild | 3 +- |
| 77 |
sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 88 +- |
| 78 |
sci-chemistry/gromacs/gromacs-9999.ebuild | 3 +- |
| 79 |
sci-chemistry/openbabel-perl/ChangeLog | 10 - |
| 80 |
sci-chemistry/openbabel-perl/Manifest | 1 - |
| 81 |
.../files/openbabel-perl-2.3.1-makefile.patch | 9 - |
| 82 |
sci-chemistry/openbabel-perl/metadata.xml | 12 - |
| 83 |
.../openbabel-perl/openbabel-perl-2.3.1.ebuild | 69 - |
| 84 |
sci-chemistry/openbabel-python/ChangeLog | 10 - |
| 85 |
sci-chemistry/openbabel-python/Manifest | 1 - |
| 86 |
.../openbabel-python-2.3.1-system_openbabel.patch | 15 - |
| 87 |
sci-chemistry/openbabel-python/metadata.xml | 12 - |
| 88 |
.../openbabel-python/openbabel-python-2.3.1.ebuild | 53 - |
| 89 |
sci-chemistry/openbabel/ChangeLog | 11 - |
| 90 |
sci-chemistry/openbabel/Manifest | 1 - |
| 91 |
.../files/openbabel-2.3.0-test_lib_path.patch | 12 - |
| 92 |
sci-chemistry/openbabel/metadata.xml | 14 - |
| 93 |
sci-chemistry/openbabel/openbabel-2.3.1.ebuild | 69 - |
| 94 |
sci-chemistry/pymol/ChangeLog | 3 + |
| 95 |
sci-chemistry/pymol/pymol-9999.ebuild | 2 +- |
| 96 |
sci-libs/lemon/ChangeLog | 13 + |
| 97 |
sci-libs/lemon/Manifest | 1 + |
| 98 |
sci-libs/lemon/lemon-1.2.3.ebuild | 32 + |
| 99 |
.../Bio-BigFile => sci-libs/lemon}/metadata.xml | 0 |
| 100 |
sci-libs/libsufr/ChangeLog | 5 + |
| 101 |
sci-libs/libsufr/Manifest | 1 + |
| 102 |
.../{libsufr-0.3.1.ebuild => libsufr-0.3.2.ebuild} | 0 |
| 103 |
.../petsc/files/petsc-disable-env-warnings.patch | 13 + |
| 104 |
.../petsc/files/petsc-fix-afterimage.patch | 71 + |
| 105 |
sci-mathematics/petsc/files/petsc-fix-xops.patch | 21 + |
| 106 |
sci-mathematics/petsc/metadata.xml | 7 +- |
| 107 |
sci-mathematics/petsc/petsc-3.2_p6.ebuild | 211 +- |
| 108 |
51 files changed, 3811 insertions(+), 477 deletions(-) |
Archives