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To:	gentoo-commits@g.o
From:	"Andrey Kislyuk (weaver)" <weaver@g.o>
Subject:	gentoo-x86 commit in sci-biology/mummer: mummer-3.21.ebuild ChangeLog
Date:	Mon, 09 Mar 2009 19:57:28 +0000

weaver      09/03/09 19:57:28

  Modified:             mummer-3.21.ebuild ChangeLog
  Log:
  QA fixes
  (Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)

Revision  Changes    Path
1.4                  sci-biology/mummer/mummer-3.21.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild?r1=1.3&r2=1.4

Index: mummer-3.21.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- mummer-3.21.ebuild	9 Mar 2009 15:55:37 -0000	1.3
+++ mummer-3.21.ebuild	9 Mar 2009 19:57:28 -0000	1.4
@@ -1,13 +1,12 @@
 # Copyright 1999-2009 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.3 2009/03/09 15:55:37 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.21.ebuild,v 1.4 2009/03/09 19:57:28 weaver Exp $
 
 inherit eutils
 
-MY_P="MUMmer${PV}"
 DESCRIPTION="A rapid whole genome aligner"
 HOMEPAGE="http://mummer.sourceforge.net/"
-SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz"
+SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
 
 LICENSE="Artistic"
 SLOT="0"
@@ -17,17 +16,17 @@
 DEPEND=""
 RDEPEND="app-shells/tcsh"
 
-S="${WORKDIR}/${MY_P}"
+S="${WORKDIR}/MUMmer${PV}"
 
 src_unpack() {
 	unpack ${A}
-	# Warning: package uses CPPFLAGS on c in addition to cpp, despite the name
+	# Warning: package uses CPPFLAGS on c as well as cpp, despite the name
 	sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \
-		-e 's/LDFLAGS  =$//' "${S}/Makefile"
+		-e 's/LDFLAGS  =$//' "${S}/Makefile" || die
 }
 
 src_compile() {
-	emake || die "emake failed"
+	emake || die
 
 	sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \
 		-e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \
@@ -35,18 +34,16 @@
 		-e 's|\(set bindir = \).*|\1/usr/bin|' \
 		-e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \
 		-e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \
-		scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths"
-	sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh
+		scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die
+	mv annotate mummer-annotate || die
+	sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die
 }
 
 src_install() {
-	dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \
-		exact-tandems promer repeat-match show-aligns gaps mummer \
-		show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* || die
-	newbin annotate mummer-annotate || die
+	dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die
 
 	insinto /usr/share/${PN}/scripts
-	doins scripts/{*.awk,*.csh,*.pl}
+	doins scripts/{*.awk,*.csh,*.pl} || die
 	insinto /usr/share/${PN}/lib
 	doins scripts/Foundation.pm || die
 



1.6                  sci-biology/mummer/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/ChangeLog?r1=1.5&r2=1.6

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- ChangeLog	9 Mar 2009 15:55:37 -0000	1.5
+++ ChangeLog	9 Mar 2009 19:57:28 -0000	1.6
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/mummer
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.5 2009/03/09 15:55:37 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.6 2009/03/09 19:57:28 weaver Exp $
+
+  09 Mar 2009; Andrey Kislyuk <weaver@g.o> mummer-3.21.ebuild:
+  QA fixes
 
   09 Mar 2009; Andrey Kislyuk <weaver@g.o> mummer-3.20.ebuild,
   mummer-3.21.ebuild:

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