| 1 |
dberkholz 07/12/10 09:11:29 |
| 2 |
|
| 3 |
Added: 1.0-consistent-system-intrinsic.patch |
| 4 |
digest-mammoth-1.0 |
| 5 |
Log: |
| 6 |
Add mammoth, a nice structural alignment program. It contains the MaxSub algorithm, which is used by lots of people. |
| 7 |
(Portage version: 2.1.4_rc4) |
| 8 |
|
| 9 |
Revision Changes Path |
| 10 |
1.1 sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch |
| 11 |
|
| 12 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch?rev=1.1&view=markup |
| 13 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch?rev=1.1&content-type=text/plain |
| 14 |
|
| 15 |
Index: 1.0-consistent-system-intrinsic.patch |
| 16 |
=================================================================== |
| 17 |
http://gcc.gnu.org/onlinedocs/gcc-4.2.2/gfortran/SYSTEM.html#SYSTEM |
| 18 |
|
| 19 |
This intrinsic is provided in both subroutine and function forms; |
| 20 |
however, only one form can be used in any given program unit. |
| 21 |
|
| 22 |
--- src/6apply_rot_tras.f.orig 2007-12-10 00:51:35.000000000 -0800 |
| 23 |
+++ src/6apply_rot_tras.f 2007-12-10 00:55:07.000000000 -0800 |
| 24 |
@@ -47,11 +47,11 @@ |
| 25 |
endif |
| 26 |
|
| 27 |
|
| 28 |
- call system ('echo $PWD > junk1') |
| 29 |
+ i = system ('echo $PWD > junk1') |
| 30 |
open(unit=21,file='junk1') |
| 31 |
read(21,'(a340)', end=7) path |
| 32 |
7 close(21) |
| 33 |
- call system ('rm -f junk1') |
| 34 |
+ i = system ('rm -f junk1') |
| 35 |
|
| 36 |
c write(6,*)'my path is ', path |
| 37 |
c write(6,*)tras1,tras2,tras3, |
| 38 |
|
| 39 |
|
| 40 |
|
| 41 |
1.1 sci-biology/mammoth/files/digest-mammoth-1.0 |
| 42 |
|
| 43 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/files/digest-mammoth-1.0?rev=1.1&view=markup |
| 44 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mammoth/files/digest-mammoth-1.0?rev=1.1&content-type=text/plain |
| 45 |
|
| 46 |
Index: digest-mammoth-1.0 |
| 47 |
=================================================================== |
| 48 |
MD5 241c7b3ba69974015ea82dad13b5a987 mammoth-1.0-src.tgz 319617 |
| 49 |
RMD160 32b6c9c994ba804fab352cc9cfaa3358784f1052 mammoth-1.0-src.tgz 319617 |
| 50 |
SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2 mammoth-1.0-src.tgz 319617 |
| 51 |
|
| 52 |
|
| 53 |
|
| 54 |
-- |
| 55 |
gentoo-commits@g.o mailing list |
Archives