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jlec 10/02/02 22:43:55 |
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|
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Added: 5.5-test.log.patch 5.5-allow-dynamic-linking.patch |
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Log: |
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refmac splitted from ccp4 package |
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(Portage version: 2.2_rc62/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.1 sci-chemistry/refmac/files/5.5-test.log.patch |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/refmac/files/5.5-test.log.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/refmac/files/5.5-test.log.patch?rev=1.1&content-type=text/plain |
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|
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Index: 5.5-test.log.patch |
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=================================================================== |
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--- test-framework/refmac5/test_refmac5.py 2009-06-29 15:45:37.000000000 +0200 |
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+++ test-framework/refmac5/test_refmac5.py.new 2009-06-29 15:48:05.000000000 +0200 |
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@@ -88,7 +88,8 @@ |
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'make hydr no', |
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'labin IP=IMEAN SIGIP=SIGIMEAN FREE=FreeR_flag', |
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'labout FC=FC PHIC=PHIC'], |
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- working_directory = self.test_dir) |
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+ working_directory = self.test_dir, |
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+ log_file = 'test_twinned_refinement.log') |
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|
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self.assertEqual(status, 0) |
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|
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@@ -123,7 +124,8 @@ |
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'weight auto', |
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'ncyc 20', |
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'labout FC=FC PHIC=PHIC'], |
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- working_directory = self.test_dir) |
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+ working_directory = self.test_dir, |
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+ log_file = 'test_4_domain_tls.log') |
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|
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self.assertEqual(status, 0) |
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|
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@@ -156,7 +158,8 @@ |
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'anomalous form SE -9.9 3.9', |
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'anomalous wavelength 0.97966', |
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'labout FC=FC PHIC=PHIC'], |
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- working_directory = self.test_dir) |
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+ working_directory = self.test_dir, |
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+ log_file = 'test_sad_refinement.log') |
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|
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self.assertEqual(status, 0) |
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|
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|
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|
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|
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1.1 sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/refmac/files/5.5-allow-dynamic-linking.patch?rev=1.1&content-type=text/plain |
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|
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Index: 5.5-allow-dynamic-linking.patch |
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=================================================================== |
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--- makefile_refmac.inc1.orig 2008-08-01 22:17:14.000000000 -0700 |
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+++ makefile_refmac.inc1 2008-08-01 22:18:46.000000000 -0700 |
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@@ -69,9 +69,7 @@ |
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bridge.o \ |
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i0.o \ |
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i1.o \ |
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-chbevl.o \ |
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-$(LLIBCIF) \ |
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-$(LLIBLAPACK) |
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+chbevl.o |
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#$(LLIBCCP) \ |
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#crt0.o \ |
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|
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@@ -95,8 +93,7 @@ |
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emin.o \ |
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libcheck_min.o \ |
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mol2_file.o \ |
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-sdf_files.o \ |
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-$(LLIBCCP) |
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+sdf_files.o |
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|
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SUBM = \ |
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main_makecif.o \ |
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@@ -116,9 +113,7 @@ |
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make_PDB.o \ |
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makecif.o \ |
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make_unix_ccp4.o \ |
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-make_vdw.o \ |
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-$(LLIBCCP) \ |
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-$(LLIBCIF) |
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+make_vdw.o |
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|
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SUBT = \ |
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tlsgroups.o \ |
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@@ -142,9 +137,7 @@ |
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inout_routines.o \ |
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errwrt_1.o \ |
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linalgebra.o \ |
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-subnumrec.o \ |
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-$(LLIBCCP) \ |
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-$(LLIBCIF) |
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+subnumrec.o |
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#-------------------------------------------------------------------------------- |
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|
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ed = echo 'g/^CMDW-5.0/s// /@w@q@' | tr "@" "\012" | ed -s |
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@@ -154,16 +147,16 @@ |
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all: refmac libcheck makecif |
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|
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refmac: $(SUBR) |
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- $(FC) $(FFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) |
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+ $(FC) $(FFLAGS) $(LDFLAGS) -o refmac${VERSION} ${SUBR} $(LLIBOTHERS) $(LLIBCCP) $(LLIBCIF) $(LLIBLAPACK) |
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|
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libcheck: $(SUBL) |
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- $(FC) $(FFLAGS) -o libcheck${VERSION} $(SUBL) |
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+ $(FC) $(FFLAGS) $(LDFLAGS) -o libcheck${VERSION} $(SUBL) $(LLIBCCP) |
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|
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makecif: $(SUBM) |
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- $(FC) $(FFLAGS) -o makecif${VERSION} $(SUBM) |
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+ $(FC) $(FFLAGS) $(LDFLAGS) -o makecif${VERSION} $(SUBM) $(LLIBCCP) $(LLIBCIF) |
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|
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tlsgroups: $(SUBT) |
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- $(FC) $(FFLAGS) -o tlsgroups${VERSION} $(SUBT) |
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+ $(FC) $(FFLAGS) $(LDFLAGS) -o tlsgroups${VERSION} $(SUBT) $(LLIBCCP) $(LLIBCIF) |
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|
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clean: |
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/bin/rm *.o |
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