From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/abyss: ChangeLog abyss-1.3.3.ebuild |
Date: | Tue, 29 May 2012 02:44:31 |
Message-Id: | 20120529024421.71CCE2004B@flycatcher.gentoo.org |
1 | weaver 12/05/29 02:44:21 |
2 | |
3 | Modified: ChangeLog |
4 | Added: abyss-1.3.3.ebuild |
5 | Log: |
6 | version bump |
7 | |
8 | (Portage version: 2.2.0_alpha74/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.12 sci-biology/abyss/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/ChangeLog?rev=1.12&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/ChangeLog?rev=1.12&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/ChangeLog?r1=1.11&r2=1.12 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v |
20 | retrieving revision 1.11 |
21 | retrieving revision 1.12 |
22 | diff -u -r1.11 -r1.12 |
23 | --- ChangeLog 24 Sep 2011 21:48:12 -0000 1.11 |
24 | +++ ChangeLog 29 May 2012 02:44:21 -0000 1.12 |
25 | @@ -1,6 +1,11 @@ |
26 | # ChangeLog for sci-biology/abyss |
27 | -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.11 2011/09/24 21:48:12 weaver Exp $ |
29 | +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
30 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.12 2012/05/29 02:44:21 weaver Exp $ |
31 | + |
32 | +*abyss-1.3.3 (29 May 2012) |
33 | + |
34 | + 29 May 2012; Andrey Kislyuk <weaver@g.o> +abyss-1.3.3.ebuild: |
35 | + version bump |
36 | |
37 | *abyss-1.3.0 (24 Sep 2011) |
38 | |
39 | |
40 | |
41 | |
42 | 1.1 sci-biology/abyss/abyss-1.3.3.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.3.3.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/abyss/abyss-1.3.3.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: abyss-1.3.3.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2012 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.3.ebuild,v 1.1 2012/05/29 02:44:21 weaver Exp $ |
52 | |
53 | EAPI="4" |
54 | |
55 | inherit autotools |
56 | |
57 | DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" |
58 | HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" |
59 | SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" |
60 | |
61 | LICENSE="abyss" |
62 | SLOT="0" |
63 | IUSE="+mpi openmp" |
64 | KEYWORDS="~amd64 ~x86" |
65 | |
66 | DEPEND=" |
67 | dev-cpp/sparsehash |
68 | mpi? ( virtual/mpi )" |
69 | RDEPEND="${DEPEND}" |
70 | |
71 | # todo: --enable-maxk=N configure option |
72 | # todo: fix automagic mpi toggling |
73 | |
74 | src_prepare() { |
75 | sed -i -e "s/-Werror//" configure.ac || die #365195 |
76 | sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die |
77 | eautoreconf |
78 | } |
79 | |
80 | src_configure() { |
81 | econf \ |
82 | $(use_enable openmp) |
83 | } |