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commit: f67b7b7711a847bed69fcec066f3aa4d3b42427d |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sat Jul 30 15:43:31 2011 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sat Jul 30 15:43:31 2011 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f67b7b77 |
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|
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sci-biology/gbrowse: add missing brackets cause a perl error while exporting a PNG image |
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|
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(Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit) |
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|
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--- |
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sci-biology/gbrowse/ChangeLog | 5 +++++ |
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sci-biology/gbrowse/files/fix-PNG-export.patch | 11 +++++++++++ |
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sci-biology/gbrowse/gbrowse-2.39.ebuild | 3 ++- |
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3 files changed, 18 insertions(+), 1 deletions(-) |
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|
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diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLog |
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index 5c2bd3e..a55fdce 100644 |
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--- a/sci-biology/gbrowse/ChangeLog |
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+++ b/sci-biology/gbrowse/ChangeLog |
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@@ -3,6 +3,11 @@ |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $ |
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|
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30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ gbrowse-2.39.ebuild, +files/fix-PNG-export.patch: |
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+ sci-biology/gbrowse: add missing brackets cause a perl error while exporting |
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+ a PNG image gbrowse-2.39.ebuild files/fix-PNG-export.patch |
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+ |
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+ 30 Jul 2011; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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gbrowse-2.39.ebuild, +files/destdir.patch: |
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added support for --destdir, patch sent to upstream gbrowse-2.39.ebuild |
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|
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diff --git a/sci-biology/gbrowse/files/fix-PNG-export.patch b/sci-biology/gbrowse/files/fix-PNG-export.patch |
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new file mode 100644 |
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index 0000000..469f752 |
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--- /dev/null |
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+++ b/sci-biology/gbrowse/files/fix-PNG-export.patch |
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@@ -0,0 +1,11 @@ |
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+--- lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm.ori 2011-07-30 17:14:28.000000000 +0200 |
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++++ lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm 2011-07-30 17:13:13.000000000 +0200 |
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+@@ -30,7 +30,7 @@ |
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+ sub setting { |
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+ my $self = shift; |
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+ my ($label,$option,@rest) = @_ >= 2 ? @_ : ('general',@_); |
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+- $label = 'general' if lc $label eq 'general'; # buglet |
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++ $label = 'general' if lc($label) eq 'general'; # buglet |
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+ $self->SUPER::setting($label,$option,@rest); |
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+ } |
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+ |
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|
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diff --git a/sci-biology/gbrowse/gbrowse-2.39.ebuild b/sci-biology/gbrowse/gbrowse-2.39.ebuild |
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index 35af68f..c0bcf25 100644 |
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--- a/sci-biology/gbrowse/gbrowse-2.39.ebuild |
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+++ b/sci-biology/gbrowse/gbrowse-2.39.ebuild |
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@@ -90,7 +90,8 @@ src_prepare() { |
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sed -i 's/return unless -t STDIN/return/' install_util/GBrowseInstall.pm || die |
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sed -i 's/process_/bp_process_/g' INSTALL || die |
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epatch "${FILESDIR}"/GBrowseInstall.pm-"${PV}".patch || die "Failed to apply GBrowseInstall.pm-"${PV}".patch" |
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- epatch "${FILESDIR}"/destdir.patch || die "Failed to apply destdir.patch " |
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+ epatch "${FILESDIR}"/destdir.patch || die "Failed to apply destdir.patch" |
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+ epatch "${FILESDIR}"/fix-PNG-export.patch || die "Failed to apply fix-PNG-export.patch" |
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} |
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|
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src_configure() { |
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