[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.49.ebuild

[Olivier Fisette (ribosome)]

ribosome    09/01/16 17:04:14

  Modified:             ChangeLog
  Added:                biopython-1.49.ebuild
  Log:
  New upstream version (fixes bug #248799).
  (Portage version: 2.2_rc21/cvs/Linux 2.6.27-gentoo-r7 x86_64)

Revision  Changes    Path
1.27                 sci-biology/biopython/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.27&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.27&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.26&r2=1.27

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.26
retrieving revision 1.27
diff -u -r1.26 -r1.27
--- ChangeLog	6 Aug 2008 14:53:49 -0000	1.26
+++ ChangeLog	16 Jan 2009 17:04:14 -0000	1.27
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/biopython
-# Copyright 2002-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.26 2008/08/06 14:53:49 ulm Exp $
+# Copyright 2002-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.27 2009/01/16 17:04:14 ribosome Exp $
+
+*biopython-1.49 (16 Jan 2009)
+
+  16 Jan 2009; Olivier Fisette <ribosome@g.o>
+  +files/biopython-1.49-flex.patch, +biopython-1.49.ebuild:
+  Version bump. Thanks to Juan Aguado <juantxorena@×××××.com> for his work.
+  Fixes bug #248799.
 
   06 Aug 2008; Ulrich Mueller <ulm@g.o> metadata.xml:
   Add USE flag description to metadata wrt GLEP 56.



1.1                  sci-biology/biopython/biopython-1.49.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/biopython/biopython-1.49.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/biopython/biopython-1.49.ebuild?rev=1.1&content-type=text/plain

Index: biopython-1.49.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.49.ebuild,v 1.1 2009/01/16 17:04:14 ribosome Exp $

NEED_PYTHON=2.3
inherit distutils eutils

DESCRIPTION="Biopython - Python modules for computational molecular biology"
LICENSE="as-is"
HOMEPAGE="http://www.biopython.org"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"

SLOT="0"
IUSE="mysql postgres"
KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86"

DEPEND="dev-python/numpy
	>=dev-python/reportlab-2.0
	sys-devel/flex"

RDEPEND="${DEPEND}
	mysql? ( dev-python/mysql-python )
	postgres? ( dev-python/psycopg )"

src_unpack() {
	unpack ${A}
	cd "${S}"
	epatch "${FILESDIR}/${P}-flex.patch"
}

src_compile() {
	distutils_src_compile
}

src_install() {
	DOCS="CONTRIB DEPRECATED NEWS README"
	distutils_src_install

	dodir "/usr/share/doc/${PF}"
	cp -r Doc/* "${D}/usr/share/doc/${PF}/" || \
			die "Failed to install documentation."
	dodir "/usr/share/${PN}"
	rm Tests/*.pyc || \
			die "Failed to remove precompiled test files."
	cp -r --preserve=mode Scripts Tests "${D}/usr/share/${PN}/" || \
			die "Failed to install shared files."
}

src_test() {
	cd "${S}/Tests"
	PYTHONPATH="${PYTHONPATH}:${S}" \
			python run_tests.py --no-gui || die "Tests failed."
}