jlec 12/06/23 11:21:23
Modified: ChangeLog metadata.xml
Added: molden-4.8-r2.ebuild molden-5.0.ebuild
Removed: molden-4.8-r1.ebuild molden-4.8.ebuild
molden-4.7-r1.ebuild
Log:
sci-chemistry/molden: Fix buffer overflow, #342907; Version Bump, #355741; Fix build failures, #358917, #423015; drop old
(Portage version: 2.2.0_alpha111/cvs/Linux x86_64)
Revision Changes Path
1.39 sci-chemistry/molden/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/ChangeLog?rev=1.39&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/ChangeLog?rev=1.39&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/ChangeLog?r1=1.38&r2=1.39
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v
retrieving revision 1.38
retrieving revision 1.39
diff -u -r1.38 -r1.39
--- ChangeLog 21 Jun 2011 16:03:06 -0000 1.38
+++ ChangeLog 23 Jun 2012 11:21:23 -0000 1.39
@@ -1,6 +1,16 @@
# ChangeLog for sci-chemistry/molden
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v 1.38 2011/06/21 16:03:06 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v 1.39 2012/06/23 11:21:23 jlec Exp $
+
+*molden-5.0 (23 Jun 2012)
+*molden-4.8-r2 (23 Jun 2012)
+
+ 23 Jun 2012; Justin Lecher <jlec@g.o> -molden-4.7-r1.ebuild,
+ -molden-4.8.ebuild, -molden-4.8-r1.ebuild, +molden-4.8-r2.ebuild,
+ files/molden-4.8-overflow.patch, +molden-5.0.ebuild,
+ +files/molden-5.0-ambfor.patch, metadata.xml:
+ Fix buffer overflow, #342907; Version Bump, #355741; Fix build failures,
+ #358917, #423015; drop old
21 Jun 2011; Justin Lecher <jlec@g.o> molden-4.7.ebuild,
molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild:
1.5 sci-chemistry/molden/metadata.xml
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/metadata.xml?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/metadata.xml?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/metadata.xml?r1=1.4&r2=1.5
Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/molden/metadata.xml,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- metadata.xml 20 Sep 2006 05:08:59 -0000 1.4
+++ metadata.xml 23 Jun 2012 11:21:23 -0000 1.5
@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-chemistry</herd>
+ <herd>sci-chemistry</herd>
</pkgmetadata>
1.1 sci-chemistry/molden/molden-4.8-r2.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-4.8-r2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-4.8-r2.ebuild?rev=1.1&content-type=text/plain
Index: molden-4.8-r2.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/molden-4.8-r2.ebuild,v 1.1 2012/06/23 11:21:23 jlec Exp $
EAPI=4
inherit eutils fortran-2 flag-o-matic toolchain-funcs
MY_P="${PN}${PV}"
DESCRIPTION="Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac"
HOMEPAGE="http://www.cmbi.kun.nl/~schaft/molden/molden.html"
SRC_URI="ftp://ftp.cmbi.kun.nl/pub/molgraph/${PN}/${MY_P}.tar.gz"
LICENSE="as-is"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ia64 ~x86"
IUSE="opengl"
RDEPEND="
virtual/fortran
x11-libs/libXmu
opengl? (
media-libs/freeglut
virtual/opengl )"
DEPEND="${RDEPEND}
x11-misc/gccmakedep
app-editors/vim"
# vim provides ex, which the build system uses (surf/Makefile, at least)
S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch "${FILESDIR}"/${P}-ambfor.patch \
"${FILESDIR}"/${P}-overflow.patch \
"${FILESDIR}"/${P}-ldflags.patch \
"${FILESDIR}"/${PN}-4.7-implicit-dec.patch
sed \
-e 's:makedepend:gccmakedep:g' \
-e "s:/usr/include/sgidefs.h::g" \
-i surf/Makefile || die
sed 's:shell g77:shell $(FC):g' -i makefile || die
}
src_compile() {
# Use -mieee on alpha, according to the Makefile
use alpha && append-flags -mieee
# Honor CC, CFLAGS, FC, and FFLAGS from environment;
# unfortunately a bash bug prevents us from doing typeset and
# assignment on the same line.
typeset -a args
args=(
CC="$(tc-getCC) ${CFLAGS}" \
FC="$(tc-getFC)" \
LDR="$(tc-getFC)" \
FFLAGS="${FFLAGS}" )
einfo "Building Molden..."
emake -j1 "${args[@]}"
if use opengl ; then
einfo "Building Molden OpenGL helper..."
emake -j1 "${args[@]}" moldenogl
fi
}
src_install() {
dobin ${PN} g${PN}
if use opengl ; then
dobin ${PN}ogl
fi
dodoc HISTORY README REGISTER
cd doc
uncompress * && dodoc *
}
1.1 sci-chemistry/molden/molden-5.0.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-5.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-5.0.ebuild?rev=1.1&content-type=text/plain
Index: molden-5.0.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/molden-5.0.ebuild,v 1.1 2012/06/23 11:21:23 jlec Exp $
EAPI=4
inherit eutils fortran-2 flag-o-matic toolchain-funcs
MY_P="${PN}${PV}"
DESCRIPTION="Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac"
HOMEPAGE="http://www.cmbi.kun.nl/~schaft/molden/molden.html"
SRC_URI="ftp://ftp.cmbi.kun.nl/pub/molgraph/${PN}/${MY_P}.tar.gz"
LICENSE="as-is"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ia64 ~x86"
IUSE="opengl"
RDEPEND="
virtual/fortran
x11-libs/libXmu
opengl? (
media-libs/freeglut
virtual/opengl )"
DEPEND="${RDEPEND}
x11-misc/gccmakedep
app-editors/vim"
# vim provides ex, which the build system uses (surf/Makefile, at least)
S="${WORKDIR}/${MY_P}"
src_prepare() {
epatch \
"${FILESDIR}"/${P}-ambfor.patch \
"${FILESDIR}"/${PN}-4.8-overflow.patch \
"${FILESDIR}"/${PN}-4.8-ldflags.patch \
"${FILESDIR}"/${PN}-4.7-implicit-dec.patch
sed \
-e 's:makedepend:gccmakedep:g' \
-e "s:/usr/include/sgidefs.h::g" \
-i surf/Makefile || die
sed 's:shell g77:shell $(FC):g' -i makefile || die
}
src_compile() {
# Use -mieee on alpha, according to the Makefile
use alpha && append-flags -mieee
# Honor CC, CFLAGS, FC, and FFLAGS from environment;
# unfortunately a bash bug prevents us from doing typeset and
# assignment on the same line.
typeset -a args
args=(
CC="$(tc-getCC) ${CFLAGS}" \
FC="$(tc-getFC)" \
LDR="$(tc-getFC)" \
FFLAGS="${FFLAGS}" )
einfo "Building Molden..."
emake -j1 "${args[@]}"
if use opengl ; then
einfo "Building Molden OpenGL helper..."
emake -j1 "${args[@]}" moldenogl
fi
}
src_install() {
dobin ${PN} g${PN}
if use opengl ; then
dobin ${PN}ogl
fi
dodoc HISTORY README REGISTER
cd doc
uncompress * && dodoc *
}
|
