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To: gentoo-commits@g.o
From: "Martin Mokrejs" <mmokrejs@...>
Subject: proj/sci:master commit in: sci-biology/jalview/
Date: Mon, 14 Feb 2011 15:48:49 +0000 (UTC)
commit:     197c94eaeb8a4ac41f08866959e00006fde27dcf
Author:     Martin Mokrejs <mmokrejs <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 14 15:32:40 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Feb 14 15:32:40 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=197c94ea

sci-biology/jalview: version bump

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/jalview/jalview-2.4.ebuild |   62 --------------------------------
 1 files changed, 0 insertions(+), 62 deletions(-)

diff --git a/sci-biology/jalview/jalview-2.4.ebuild b/sci-biology/jalview/jalview-2.4.ebuild
deleted file mode 100644
index 1e4e4ef..0000000
--- a/sci-biology/jalview/jalview-2.4.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-1.5.1.ebuild,v 1.1 2009/10/02 21:47:11 weaver Exp $
-
-EAPI="2"
-
-EANT_GENTOO_CLASSPATH="jmol,castor-1.0,log4j,commons-logging,commons-discovery,wsdl4j,xerces-2,saaj,vecmath,javahelp,sun-jaf"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_BUILD_TARGET="distclean makedist"
-JAVA_PKG_IUSE="source doc"
-
-inherit java-pkg-2 java-ant-2 eutils
-
-DESCRIPTION="A multiple DNA sequence alignment editor"
-HOMEPAGE="http://www.jalview.org/"
-SRC_URI="http://www.jalview.org/source/jalview_2_4.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-COMMON_DEPS=">=sci-chemistry/jmol-11.0.2 <sci-chemistry/jmol-11.1
-	dev-java/castor:1.0
-	dev-java/log4j"
-DEPEND=">=virtual/jdk-1.5
-	${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.5
-	dev-java/commons-discovery
-	dev-java/commons-logging
-	dev-java/saaj
-	dev-java/xerces
-	dev-java/wsdl4j
-	dev-java/vecmath
-	dev-java/javahelp
-	dev-java/sun-jaf
-	dev-java/sun-javamail
-	${COMMON_DEPS}"
-
-# Note: dev-java/vecmath is in the java overlay.
-
-S="${WORKDIR}/${PN}"
-
-java_prepare() {
-	perl -i -ne'print unless /<jalopy/../<\/jalopy>/ or /<taskdef.+name="jalopy"/../<\/taskdef>/ or /<include name="jalview-jalopy.xml"/' build.xml
-	find -name '*.jar' | egrep -v '(vamsas|axis|jaxrpc|roxes-ant-tasks|regex|xml-apis)' | xargs rm -v
-}
-
-src_install() {
-	java-pkg_dojar dist/*.jar
-
-	MY_CP=""
-	for i in $(cd dist; ls *.jar); do
-		MY_CP="${MY_CP}:${ROOT}usr/share/${PN}/lib/$i"
-	done
-	java-pkg_dolauncher jalview --main jalview.bin.Jalview \
-		--java_args "-cp ${MY_CP}:$(java-config -p ${EANT_GENTOO_CLASSPATH})"
-
-	use source && java-pkg_dosrc src
-#	use doc && java-pkg_dojavadoc something - no docs to be seen
-	dodoc README doc/*
-}


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