1 |
commit: 197c94eaeb8a4ac41f08866959e00006fde27dcf |
2 |
Author: Martin Mokrejs <mmokrejs <AT> gentoo <DOT> org> |
3 |
AuthorDate: Mon Feb 14 15:32:40 2011 +0000 |
4 |
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
5 |
CommitDate: Mon Feb 14 15:32:40 2011 +0000 |
6 |
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=197c94ea |
7 |
|
8 |
sci-biology/jalview: version bump |
9 |
|
10 |
(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit) |
11 |
|
12 |
--- |
13 |
sci-biology/jalview/jalview-2.4.ebuild | 62 -------------------------------- |
14 |
1 files changed, 0 insertions(+), 62 deletions(-) |
15 |
|
16 |
diff --git a/sci-biology/jalview/jalview-2.4.ebuild b/sci-biology/jalview/jalview-2.4.ebuild |
17 |
deleted file mode 100644 |
18 |
index 1e4e4ef..0000000 |
19 |
--- a/sci-biology/jalview/jalview-2.4.ebuild |
20 |
+++ /dev/null |
21 |
@@ -1,62 +0,0 @@ |
22 |
-# Copyright 1999-2010 Gentoo Foundation |
23 |
-# Distributed under the terms of the GNU General Public License v2 |
24 |
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-1.5.1.ebuild,v 1.1 2009/10/02 21:47:11 weaver Exp $ |
25 |
- |
26 |
-EAPI="2" |
27 |
- |
28 |
-EANT_GENTOO_CLASSPATH="jmol,castor-1.0,log4j,commons-logging,commons-discovery,wsdl4j,xerces-2,saaj,vecmath,javahelp,sun-jaf" |
29 |
-JAVA_ANT_REWRITE_CLASSPATH="true" |
30 |
-EANT_BUILD_TARGET="distclean makedist" |
31 |
-JAVA_PKG_IUSE="source doc" |
32 |
- |
33 |
-inherit java-pkg-2 java-ant-2 eutils |
34 |
- |
35 |
-DESCRIPTION="A multiple DNA sequence alignment editor" |
36 |
-HOMEPAGE="http://www.jalview.org/" |
37 |
-SRC_URI="http://www.jalview.org/source/jalview_2_4.tar.gz" |
38 |
- |
39 |
-LICENSE="GPL-2" |
40 |
-SLOT="0" |
41 |
-KEYWORDS="~amd64 ~x86" |
42 |
-IUSE="" |
43 |
- |
44 |
-COMMON_DEPS=">=sci-chemistry/jmol-11.0.2 <sci-chemistry/jmol-11.1 |
45 |
- dev-java/castor:1.0 |
46 |
- dev-java/log4j" |
47 |
-DEPEND=">=virtual/jdk-1.5 |
48 |
- ${COMMON_DEPS}" |
49 |
-RDEPEND=">=virtual/jre-1.5 |
50 |
- dev-java/commons-discovery |
51 |
- dev-java/commons-logging |
52 |
- dev-java/saaj |
53 |
- dev-java/xerces |
54 |
- dev-java/wsdl4j |
55 |
- dev-java/vecmath |
56 |
- dev-java/javahelp |
57 |
- dev-java/sun-jaf |
58 |
- dev-java/sun-javamail |
59 |
- ${COMMON_DEPS}" |
60 |
- |
61 |
-# Note: dev-java/vecmath is in the java overlay. |
62 |
- |
63 |
-S="${WORKDIR}/${PN}" |
64 |
- |
65 |
-java_prepare() { |
66 |
- perl -i -ne'print unless /<jalopy/../<\/jalopy>/ or /<taskdef.+name="jalopy"/../<\/taskdef>/ or /<include name="jalview-jalopy.xml"/' build.xml |
67 |
- find -name '*.jar' | egrep -v '(vamsas|axis|jaxrpc|roxes-ant-tasks|regex|xml-apis)' | xargs rm -v |
68 |
-} |
69 |
- |
70 |
-src_install() { |
71 |
- java-pkg_dojar dist/*.jar |
72 |
- |
73 |
- MY_CP="" |
74 |
- for i in $(cd dist; ls *.jar); do |
75 |
- MY_CP="${MY_CP}:${ROOT}usr/share/${PN}/lib/$i" |
76 |
- done |
77 |
- java-pkg_dolauncher jalview --main jalview.bin.Jalview \ |
78 |
- --java_args "-cp ${MY_CP}:$(java-config -p ${EANT_GENTOO_CLASSPATH})" |
79 |
- |
80 |
- use source && java-pkg_dosrc src |
81 |
-# use doc && java-pkg_dojavadoc something - no docs to be seen |
82 |
- dodoc README doc/* |
83 |
-} |