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weaver 09/04/08 20:45:57 |
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|
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Modified: bioperl-9999.ebuild ChangeLog |
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Added: bioperl-1.6.0-r2.ebuild |
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Removed: bioperl-1.6.0-r1.ebuild |
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Log: |
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Add missing deps |
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(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64) |
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|
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Revision Changes Path |
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1.2 sci-biology/bioperl/bioperl-9999.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-9999.ebuild?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-9999.ebuild?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-9999.ebuild?r1=1.1&r2=1.2 |
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|
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Index: bioperl-9999.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999.ebuild,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- bioperl-9999.ebuild 16 Mar 2009 23:37:10 -0000 1.1 |
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+++ bioperl-9999.ebuild 8 Apr 2009 20:45:57 -0000 1.2 |
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@@ -1,6 +1,6 @@ |
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# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999.ebuild,v 1.1 2009/03/16 23:37:10 weaver Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999.ebuild,v 1.2 2009/04/08 20:45:57 weaver Exp $ |
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|
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EAPI="2" |
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|
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@@ -18,8 +18,6 @@ |
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KEYWORDS="" |
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IUSE="-minimal graphviz ${SUBPROJECTS}" |
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|
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-# TODO: SVG::Graph, Convert::Binary::C |
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- |
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DEPEND="virtual/perl-Module-Build |
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dev-perl/Data-Stag |
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dev-perl/libwww-perl |
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@@ -47,6 +45,8 @@ |
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dev-perl/Data-Stag |
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dev-perl/Math-Random |
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dev-perl/PostScript |
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+ dev-perl/Convert-Binary-C |
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+ dev-perl/SVG-Graph |
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) |
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graphviz? ( dev-perl/GraphViz )" |
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|
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|
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|
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|
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1.36 sci-biology/bioperl/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/ChangeLog?rev=1.36&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/ChangeLog?rev=1.36&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/ChangeLog?r1=1.35&r2=1.36 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v |
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retrieving revision 1.35 |
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retrieving revision 1.36 |
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diff -u -r1.35 -r1.36 |
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--- ChangeLog 24 Mar 2009 21:16:31 -0000 1.35 |
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+++ ChangeLog 8 Apr 2009 20:45:57 -0000 1.36 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/bioperl |
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# Copyright 2002-2009 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.35 2009/03/24 21:16:31 ribosome Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.36 2009/04/08 20:45:57 weaver Exp $ |
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+ |
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+*bioperl-1.6.0-r2 (08 Apr 2009) |
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+ |
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+ 08 Apr 2009; Andrey Kislyuk <weaver@g.o> -bioperl-1.6.0-r1.ebuild, |
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+ +bioperl-1.6.0-r2.ebuild, bioperl-9999.ebuild: |
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+ Revision bump - add missing dependencies |
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|
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24 Mar 2009; Olivier Fisette <ribosome@g.o> metadata.xml: |
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Giving up maintainership of this package. |
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|
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|
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|
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1.1 sci-biology/bioperl/bioperl-1.6.0-r2.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: bioperl-1.6.0-r2.ebuild |
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=================================================================== |
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# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.0-r2.ebuild,v 1.1 2009/04/08 20:45:57 weaver Exp $ |
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|
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EAPI="2" |
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|
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inherit perl-module |
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|
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SUBPROJECTS="+db +network +run" |
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|
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DESCRIPTION="Perl tools for bioinformatics - Core modules" |
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HOMEPAGE="http://www.bioperl.org/" |
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SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2" |
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|
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LICENSE="Artistic GPL-2" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="-minimal graphviz ${SUBPROJECTS}" |
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|
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DEPEND="virtual/perl-Module-Build |
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dev-perl/Data-Stag |
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dev-perl/libwww-perl |
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!minimal? ( |
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dev-perl/Ace |
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dev-perl/Bio-ASN1-EntrezGene |
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dev-perl/Spreadsheet-ParseExcel |
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dev-perl/Spreadsheet-WriteExcel |
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>=dev-perl/XML-SAX-0.15 |
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dev-perl/Graph |
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dev-perl/SOAP-Lite |
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dev-perl/Array-Compare |
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dev-perl/SVG |
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dev-perl/XML-Simple |
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dev-perl/XML-Parser |
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dev-perl/XML-Twig |
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>=dev-perl/HTML-Parser-3.60 |
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>=dev-perl/XML-Writer-0.4 |
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dev-perl/Clone |
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dev-perl/XML-DOM |
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dev-perl/set-scalar |
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dev-perl/XML-XPath |
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dev-perl/XML-DOM-XPath |
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dev-perl/Algorithm-Munkres |
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dev-perl/Data-Stag |
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dev-perl/Math-Random |
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dev-perl/PostScript |
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dev-perl/Convert-Binary-C |
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dev-perl/SVG-Graph |
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) |
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graphviz? ( dev-perl/GraphViz )" |
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|
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RDEPEND="${DEPEND}" |
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PDEPEND=" |
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db? ( >=sci-biology/bioperl-db-${PV} ) |
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network? ( >=sci-biology/bioperl-network-${PV} ) |
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run? ( >=sci-biology/bioperl-run-${PV} )" |
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|
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S="${WORKDIR}/BioPerl-${PV}" |
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|
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src_configure() { |
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sed -i -e '/add_post_install_script.*symlink_script.pl/d' \ |
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-e "/'CPAN' *=> *1.81/d" "${S}/Build.PL" || die |
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if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi |
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perl-module_src_configure |
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} |
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|
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src_install() { |
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mydoc="AUTHORS BUGS FAQ" |
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perl-module_src_install |
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} |