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je_fro 09/05/02 01:17:04 |
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|
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Modified: ChangeLog rebase-610.ebuild |
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Added: rebase-905.ebuild |
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Removed: rebase-808.ebuild rebase-708.ebuild |
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rebase-707.ebuild |
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Log: |
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Latest from neb, with a kick from jlec. |
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(Portage version: 2.1.6.11/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.88 sci-biology/rebase/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/ChangeLog?rev=1.88&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/ChangeLog?rev=1.88&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/ChangeLog?r1=1.87&r2=1.88 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v |
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retrieving revision 1.87 |
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retrieving revision 1.88 |
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diff -u -r1.87 -r1.88 |
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--- ChangeLog 27 Aug 2008 14:58:50 -0000 1.87 |
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+++ ChangeLog 2 May 2009 01:17:04 -0000 1.88 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for sci-biology/rebase |
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-# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.87 2008/08/27 14:58:50 ribosome Exp $ |
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+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.88 2009/05/02 01:17:04 je_fro Exp $ |
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+ |
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+*rebase-905 (02 May 2009) |
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+ |
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+ 02 May 2009; Jeff Gardner <je_fro@g.o> +rebase-905.ebuild: |
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+ Latest from neb, with a kick from jlec. |
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|
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*rebase-808 (27 Aug 2008) |
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|
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|
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|
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|
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1.7 sci-biology/rebase/rebase-610.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/rebase-610.ebuild?rev=1.7&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/rebase-610.ebuild?rev=1.7&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/rebase-610.ebuild?r1=1.6&r2=1.7 |
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|
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Index: rebase-610.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-610.ebuild,v |
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retrieving revision 1.6 |
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retrieving revision 1.7 |
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diff -u -r1.6 -r1.7 |
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--- rebase-610.ebuild 20 Nov 2006 20:56:47 -0000 1.6 |
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+++ rebase-610.ebuild 2 May 2009 01:17:04 -0000 1.7 |
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@@ -1,6 +1,6 @@ |
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-# Copyright 1999-2006 Gentoo Foundation |
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+# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-610.ebuild,v 1.6 2006/11/20 20:56:47 blubb Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-610.ebuild,v 1.7 2009/05/02 01:17:04 je_fro Exp $ |
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|
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DESCRIPTION="A restriction enzyme database" |
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LICENSE="public-domain" |
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@@ -14,6 +14,7 @@ |
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KEYWORDS="amd64 ppc ppc64 ~sparc x86" |
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|
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DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )" |
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+RDEPEND="${DEPEND}" |
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|
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src_compile() { |
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if use emboss; then |
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|
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|
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|
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1.1 sci-biology/rebase/rebase-905.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/rebase-905.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/rebase/rebase-905.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: rebase-905.ebuild |
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=================================================================== |
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# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-905.ebuild,v 1.1 2009/05/02 01:17:04 je_fro Exp $ |
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|
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DESCRIPTION="A restriction enzyme database" |
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LICENSE="public-domain" |
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HOMEPAGE="http://rebase.neb.com" |
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#SRC_URI="mirror://gentoo/${P}.tar.bz2" |
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SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.bz2" |
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|
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SLOT="0" |
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# Minimal build keeps only the indexed files (if applicable) and the |
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# documentation. The non-indexed database is not installed. |
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IUSE="emboss minimal" |
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KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" |
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|
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DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" |
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RDEPEND="${DEPEND}" |
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|
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src_compile() { |
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if use emboss; then |
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echo; einfo "Indexing Rebase for usage with EMBOSS." |
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mkdir REBASE |
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EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ |
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-protofile proto.${PV} -equivalences \ |
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|| die "Indexing Rebase failed." |
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echo |
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fi |
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} |
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|
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src_install() { |
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if ! use minimal; then |
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insinto /usr/share/${PN} |
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doins withrefm.${PV} proto.${PV} gcg.${PV} || die \ |
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"Failed to install raw database." |
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fi |
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newdoc REBASE.DOC README || die "Failed to install documentation." |
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if use emboss; then |
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insinto /usr/share/EMBOSS/data/REBASE |
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doins REBASE/embossre.{enz,ref,sup} || die \ |
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"Failed to install EMBOSS data files." |
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insinto /usr/share/EMBOSS/data |
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doins REBASE/embossre.equ \ |
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|| die "Failed to install enzyme prototypes file." |
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fi |
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} |
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