[gentoo-commits] gentoo-x86 commit in sci-biology/glimmer: metadata.xml ChangeLog Manifest glimmer-3.02.ebuild

[Andrey Kislyuk (weaver)]

weaver      08/09/07 13:06:53

  Added:                metadata.xml ChangeLog Manifest glimmer-3.02.ebuild
  Log:
  Import from science overlay
  (Portage version: 2.2_rc8/cvs/Linux 2.6.26-tuxonice i686)

Revision  Changes    Path
1.1                  sci-biology/glimmer/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>maintainer-wanted</herd>
</pkgmetadata>



1.1                  sci-biology/glimmer/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/glimmer
# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/ChangeLog,v 1.1 2008/09/07 13:06:53 weaver Exp $

*glimmer-3.02 (07 Sep 2008)

  07 Sep 2008; weaver <weaver@g.o> +metadata.xml,
  +glimmer-3.02.ebuild:
  Import from science overlay




1.1                  sci-biology/glimmer/Manifest

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/Manifest?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/Manifest?rev=1.1&content-type=text/plain

Index: Manifest
===================================================================
DIST glimmer302.tar.gz 5637075 RMD160 bc29bb045f7a4179504cb3843741393f42e11ab8 SHA1 e2f27fdab82cd8978f1452bfcd4c0287c52b77b7 SHA256 a1e422ee56f495f9f99e1741ba2043f026fc8182afcc47cb20cfd2d989537221
EBUILD glimmer-3.02.ebuild 839 RMD160 fbe13a8a0733c0b2c54c94d3ccf7d45d85ce6496 SHA1 272a86bfe05bc0497e942c0935df0296acdbc4fc SHA256 f71989667fdaa9701f56d29cc0eec1645293998b2351ee40ec9255d02006d2d5
MISC ChangeLog 261 RMD160 3d4b2dad41a2f02e4f2a2e8649db1dc83f1d4291 SHA1 e840f8786b3f1b5a7d9eaf1828e7d080e45d85cc SHA256 c6e746e68cb4436a9fc4f7f17a7fd3e0b4ec80ebaf1b9b4c100c96f71ca20a33
MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42



1.1                  sci-biology/glimmer/glimmer-3.02.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/glimmer-3.02.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/glimmer/glimmer-3.02.ebuild?rev=1.1&content-type=text/plain

Index: glimmer-3.02.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/glimmer-3.02.ebuild,v 1.1 2008/09/07 13:06:53 weaver Exp $

inherit versionator

MY_PV=$(delete_all_version_separators)

DESCRIPTION="An HMM-based microbial gene finding system from TIGR"
HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/"
SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz"

LICENSE="Artistic"
SLOT="0"
IUSE=""
KEYWORDS="~x86"

DEPEND=""
RDEPEND=""

S=${WORKDIR}/${PN}${PV}

src_compile() {
	sed -i -e 's|\(set awkpath =\).*|\1 /usr/share/'${PN}'/scripts|' \
		-e 's|\(set glimmerpath =\).*|\1 /usr/bin|' scripts/* || die "failed to rewrite paths"
	cd src
	emake || die "emake failed"
}

src_install() {
	rm bin/test
	dobin bin/*

	dodir /usr/share/${PN}/scripts
	insinto /usr/share/${PN}/scripts
	doins scripts/*

	dodoc glim302notes.pdf
}