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dberkholz 08/08/04 00:11:54 |
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Added: arp-warp-bin-7.0.1-r1.ebuild metadata.xml Manifest |
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ChangeLog |
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Log: |
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(#212054) New package: ARP/wARP is a software for improvement and interpretation of crystallographic electron density maps. |
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(Portage version: 2.2_rc5/cvs/Linux 2.6.26 x86_64) |
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Revision Changes Path |
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1.1 sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r1.ebuild |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r1.ebuild?rev=1.1&content-type=text/plain |
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Index: arp-warp-bin-7.0.1-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2008 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/arp-warp-bin-7.0.1-r1.ebuild,v 1.1 2008/08/04 00:11:54 dberkholz Exp $ |
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inherit eutils python |
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|
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MY_P="arp_warp_${PV}" |
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DESCRIPTION="ARP/wARP is a software for improvement and interpretation of crystallographic electron density maps" |
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SRC_URI="${MY_P}.tar.gz" |
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HOMEPAGE="http://www.embl-hamburg.de/ARP/" |
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LICENSE="ArpWarp" |
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RESTRICT="fetch" |
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SLOT="0" |
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KEYWORDS="-* ~amd64 ~x86" |
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IUSE="" |
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RDEPEND="app-shells/tcsh |
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>=sci-chemistry/ccp4-6 |
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sys-apps/gawk |
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>=dev-lang/python-2.4" |
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DEPEND="" |
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S="${WORKDIR}/${MY_P}" |
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|
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pkg_nofetch(){ |
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elog "Fill out the form at http://www.embl-hamburg.de/ARP/" |
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elog "and place ${A} in ${DISTDIR}" |
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} |
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src_unpack() { |
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unpack ${A} |
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cd "${S}" |
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epatch "${FILESDIR}"/${PV}-setup.patch |
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epatch "${FILESDIR}"/${PV}-source-ccp4-if-needed.patch |
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} |
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src_install(){ |
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python_version |
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m_type=$(uname -m) |
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os_type=$(uname) |
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insinto /opt/${PN}/byte-code/python-${PYVER} |
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doins "${S}"/flex-wARP-src-261/*py |
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exeinto /opt/${PN}/bin/bin-${m_type}-${os_type} |
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doexe "${S}"/bin/bin-${m_type}-${os_type}/* && \ |
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doexe "${S}"/share/*sh || die |
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|
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insinto /opt/${PN}/bin/bin-${m_type}-${os_type} |
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doins "${S}"/share/*{gif,XYZ,bash,csh,dat,lib,tbl,llh} || die |
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|
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insinto /etc/profile.d/ |
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newins "${S}"/share/arpwarp_setup_base.csh 90arpwarp_setup.csh && \ |
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newins "${S}"/share/arpwarp_setup_base.bash 90arpwarp_setup.sh || die |
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dodoc "${S}"/README |
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dohtml -r "${S}"/manual/* |
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insinto /usr/share/doc/${PF} |
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doins -r "${S}"/{examples,ARP_wARP_CCP4I6.tar.gz} |
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} |
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pkg_postinst(){ |
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python_mod_optimize "${ROOT}"/opt/${PN}/byte-code/python-${PYVER} |
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testcommand=$(echo 3 2 | awk '{printf"%3.1f",$1/$2}') |
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if [ $testcommand == "1,5" ];then |
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ewarn "*** ERROR ***" |
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ewarn " 3/2=" $testcommand |
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ewarn "Invalid decimal separator (must be ".")" |
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ewarn "You need to set this correctly!!!" |
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ewarn |
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ewarn "One way of setting the decimal separator is:" |
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ewarn "setenv LC_NUMERIC C' in your .cshrc file" |
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ewarn "\tor" |
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ewarn "export LC_NUMERIC=C' in your .bashrc file" |
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ewarn "Otherwise please consult your system manager" |
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epause 10 |
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fi |
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|
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grep -q sse2 /proc/cpuinfo || einfo "The CPU is lacking SSE2! You should use the cluster at EMBL-Hamburg." |
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einfo |
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elog "The ccp4 interface file could be found in /usr/share/doc/"${P} |
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elog "To install, run ccp4i as root, navigate to System Administration," |
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elog "Install/uninstall tasks, then choose ARP_wARP_CCP4I6.tar.gz." |
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} |
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pkg_postrm() { |
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python_mod_cleanup "${ROOT}"/opt/${PN}/byte-code/python-${PYVER} |
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} |
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1.1 sci-chemistry/arp-warp-bin/metadata.xml |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/metadata.xml?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/metadata.xml?rev=1.1&content-type=text/plain |
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Index: metadata.xml |
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=================================================================== |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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<herd>sci-chemistry</herd> |
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</pkgmetadata> |
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1.1 sci-chemistry/arp-warp-bin/Manifest |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/Manifest?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/Manifest?rev=1.1&content-type=text/plain |
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Index: Manifest |
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=================================================================== |
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AUX 7.0.1-setup.patch 6330 RMD160 eb59c2023f3d023a1c50322960c4d3ee7d85b414 SHA1 7e4f8c375faea911dcf8787f735eeeca658b273b SHA256 f1136bb00c60194a504f0bf718733a13d5bea88fd88231a553f82993f97928da |
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AUX 7.0.1-source-ccp4-if-needed.patch 1334 RMD160 e1c04014322a4406eb6421c12d9d97266e294a6b SHA1 0e7c8259f8996ebd13c3df1d2b1f894d7418a85b SHA256 0a554438fa7ba994762b463b7340af5f5cab3177c62e7632a313830d92228205 |
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DIST arp_warp_7.0.1.tar.gz 212443160 RMD160 b6b821a4135520456f489cb96e650b3be61c4892 SHA1 957ddb8ad5dde9556a6306643bb638288b144ca6 SHA256 368cff316fd05ca98937f2709b0ef8b391bc71697f61c7474c4681c99b24e677 |
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EBUILD arp-warp-bin-7.0.1-r1.ebuild 2501 RMD160 67c0eb8a3ed2ac2e687616d24a9750ae58d05966 SHA1 9cf4f7cbcdbe7d649fce5c84a28b9d55efe41b69 SHA256 d2185c71a037395c9bb7750204414f76c7612dbe480d19b6558c2d9bde0cf2fe |
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MISC ChangeLog 467 RMD160 d00be537160b38ca7f1675adb7b83e3f8aeb2289 SHA1 b65a6a856f4939223daa389f23f70b55cb5af9d8 SHA256 b4dd1c68935e4a71a215c75c88bec65433ac85b1ec6662917c51052bdfe7f2ec |
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MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 |
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1.1 sci-chemistry/arp-warp-bin/ChangeLog |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog?rev=1.1&content-type=text/plain |
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Index: ChangeLog |
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=================================================================== |
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# ChangeLog for sci-chemistry/arp-warp-bin |
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# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog,v 1.1 2008/08/04 00:11:54 dberkholz Exp $ |
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*arp-warp-bin-7.0.1-r1 (04 Aug 2008) |
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04 Aug 2008; Donnie Berkholz <dberkholz@g.o>; |
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+files/7.0.1-setup.patch, +files/7.0.1-source-ccp4-if-needed.patch, |
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+metadata.xml, +arp-warp-bin-7.0.1-r1.ebuild: |
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(#212054) New package: ARP/wARP is a software for improvement and |
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interpretation of crystallographic electron density maps. |
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