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To: gentoo-commits@g.o
From: "Justin Lecher (jlec)" <jlec@g.o>
Subject: gentoo-x86 commit in sci-biology/infernal: ChangeLog infernal-1.0.2-r1.ebuild
Date: Mon, 25 Jun 2012 07:08:17 +0000 (UTC)
jlec        12/06/25 07:08:17

  Modified:             ChangeLog infernal-1.0.2-r1.ebuild
  Log:
  sci-biology/infernal: Fix for perl-5.16, #422561; move to EAPI=4
  
  (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)

Revision  Changes    Path
1.11                 sci-biology/infernal/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/ChangeLog?rev=1.11&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/ChangeLog?rev=1.11&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/ChangeLog?r1=1.10&r2=1.11

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- ChangeLog	11 Feb 2011 13:04:33 -0000	1.10
+++ ChangeLog	25 Jun 2012 07:08:17 -0000	1.11
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/infernal
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.10 2011/02/11 13:04:33 hwoarang Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.11 2012/06/25 07:08:17 jlec Exp $
+
+  25 Jun 2012; Justin Lecher <jlec@g.o> infernal-1.0.2-r1.ebuild,
+  +files/infernal-1.0.2-perl-5.16.patch:
+  Fix for perl-5.16, #422561; move to EAPI=4
 
   11 Feb 2011; Markos Chandras <hwoarang@g.o> infernal-1.0.2-r1.ebuild:
   Stable on amd64 wrt bug #353571



1.4                  sci-biology/infernal/infernal-1.0.2-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild?r1=1.3&r2=1.4

Index: infernal-1.0.2-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- infernal-1.0.2-r1.ebuild	11 Feb 2011 13:04:33 -0000	1.3
+++ infernal-1.0.2-r1.ebuild	25 Jun 2012 07:08:17 -0000	1.4
@@ -1,8 +1,8 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild,v 1.3 2011/02/11 13:04:33 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild,v 1.4 2012/06/25 07:08:17 jlec Exp $
 
-EAPI="2"
+EAPI=4
 
 inherit eutils
 
@@ -19,20 +19,29 @@
 RDEPEND="${DEPEND}"
 
 src_prepare() {
-	epatch "${FILESDIR}"/${P}-parallel-build.patch \
+	epatch \
+		"${FILESDIR}"/${P}-parallel-build.patch \
 		"${FILESDIR}"/${P}-overflows.patch \
+		"${FILESDIR}"/${P}-perl-5.16.patch \
 		"${FILESDIR}"/${P}-ldflags.patch
 }
 
 src_configure() {
-	econf --prefix="${D}/usr" \
+	econf \
+		--prefix="${D}/usr" \
 		$(use_enable mpi)
 }
 
 src_install() {
-	emake install || die
-	(cd documentation/manpages; for i in *; do newman ${i} ${i/.man/.1}; done)
+	default
+
+	pushd documentation/manpages > /dev/null
+	for i in *;
+		do newman ${i} ${i/.man/.1}
+	done
+	popd > /dev/null
+
 	insinto /usr/share/${PN}
-	doins -r benchmarks tutorial intro matrices || die
-	dodoc 00README* Userguide.pdf documentation/release-notes/* || die
+	doins -r benchmarks tutorial intro matrices
+	dodoc 00README* Userguide.pdf documentation/release-notes/*
 }





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Updated Jun 26, 2012

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