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commit: e9d321dafb3e367e5850adf9f2fe2012b542f920 |
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Author: Andrea Arteaga <andyspiros <AT> gmail <DOT> com> |
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AuthorDate: Wed Aug 3 20:32:27 2011 +0000 |
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Commit: Andrea Arteaga <andyspiros <AT> gmail <DOT> com> |
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CommitDate: Wed Aug 3 20:32:27 2011 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e9d321da |
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Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci |
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app-doc/root-docs/ChangeLog | 10 + |
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app-doc/root-docs/Manifest | 4 + |
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app-doc/root-docs/metadata.xml | 5 + |
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app-doc/root-docs/root-docs-5.30.ebuild | 25 + |
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dev-lang/idb/ChangeLog | 5 + |
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dev-lang/idb/Manifest | 6 +- |
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dev-lang/idb/idb-12.0.4.191.ebuild | 32 + |
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dev-lang/path64/ChangeLog | 60 ++ |
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dev-lang/path64/Manifest | 3 + |
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dev-lang/path64/metadata.xml | 19 + |
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dev-lang/path64/path64-9999.ebuild | 118 ++++ |
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dev-perl/BTLib/BTLib-0.19.ebuild | 21 + |
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dev-perl/BTLib/ChangeLog | 10 + |
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dev-perl/BTLib/Manifest | 4 + |
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.../go-db-perl => dev-perl/BTLib}/metadata.xml | 0 |
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dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild | 27 + |
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dev-perl/Bio-BigFile/Manifest | 4 + |
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dev-perl/Bio-BigFile/files/Build.PL.patch | 40 ++ |
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.../Gambit => dev-perl/Bio-BigFile}/metadata.xml | 0 |
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.../Bio-DB-Das-Chado/Bio-DB-Das-Chado-0.32.ebuild | 21 + |
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dev-perl/Bio-DB-Das-Chado/ChangeLog | 10 + |
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dev-perl/Bio-DB-Das-Chado/Manifest | 4 + |
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.../Bio-DB-Das-Chado}/metadata.xml | 0 |
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dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild | 30 + |
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dev-perl/Bio-SamTools/ChangeLog | 10 + |
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dev-perl/Bio-SamTools/Manifest | 4 + |
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.../Bio-SamTools}/metadata.xml | 0 |
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dev-perl/DBIx-DBStag/ChangeLog | 10 + |
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dev-perl/DBIx-DBStag/DBIx-DBStag-0.12.ebuild | 25 + |
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dev-perl/DBIx-DBStag/Manifest | 4 + |
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.../Gambit => dev-perl/DBIx-DBStag}/metadata.xml | 0 |
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dev-perl/Text-ParseWords/ChangeLog | 10 + |
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dev-perl/Text-ParseWords/Manifest | 4 + |
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.../Text-ParseWords/Text-ParseWords-3.27.ebuild | 21 + |
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.../Text-ParseWords}/metadata.xml | 0 |
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dev-perl/Time-Progress/ChangeLog | 10 + |
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dev-perl/Time-Progress/Manifest | 4 + |
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dev-perl/Time-Progress/Time-Progress-1.7.ebuild | 16 + |
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.../Gambit => dev-perl/Time-Progress}/metadata.xml | 0 |
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dev-perl/go-db-perl/Manifest | 3 + |
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dev-perl/go-db-perl/go-db-perl-0.04.ebuild | 23 + |
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.../ONTO-PERL => dev-perl/go-db-perl}/metadata.xml | 0 |
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dev-perl/go-perl/ChangeLog | 10 + |
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dev-perl/go-perl/Manifest | 4 + |
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dev-perl/go-perl/go-perl-0.13.ebuild | 21 + |
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.../Gambit => dev-perl/go-perl}/metadata.xml | 0 |
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dev-python/astropysics/ChangeLog | 5 +- |
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dev-python/astropysics/Manifest | 4 +- |
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dev-python/astropysics/astropysics-9999.ebuild | 17 +- |
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dev-python/pyamg/ChangeLog | 15 - |
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dev-python/pyamg/Manifest | 6 - |
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dev-python/pyamg/metadata.xml | 15 - |
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dev-python/pyamg/pyamg-1.0.0.ebuild | 25 - |
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dev-python/pyamg/pyamg-2.0.0.ebuild | 25 - |
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media-gfx/brlcad/.brlcad-7.20.2-r1.ebuild.swo | Bin 0 -> 16384 bytes |
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media-gfx/brlcad/ChangeLog | 10 +- |
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media-gfx/brlcad/Manifest | 4 +- |
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media-gfx/brlcad/brlcad-7.20.2-r1.ebuild | 123 ++++ |
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media-gfx/brlcad/files/brlcad-7.20.2-cmake.patch | 19 + |
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media-libs/OpenMOIV/Manifest | 23 + |
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media-libs/OpenMOIV/OpenMOIV-1.0.3a.ebuild | 42 ++ |
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.../libssm => media-libs/OpenMOIV}/metadata.xml | 0 |
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profiles/package.mask | 6 + |
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profiles/package.use.mask | 21 + |
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sci-biology/erpin/Manifest | 2 + |
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sci-biology/est2uni/ChangeLog | 23 + |
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sci-biology/est2uni/Manifest | 14 +- |
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sci-biology/est2uni/est2uni-9999.ebuild | 106 ++++ |
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.../est2uni/files/9999-est_clustering.pm.patch | 29 + |
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sci-biology/est2uni/files/9999-pipe_db.pm.patch | 15 + |
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sci-biology/estscan/ChangeLog | 4 + |
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sci-biology/estscan/Manifest | 14 +- |
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sci-biology/estscan/estscan-3.0.3.ebuild | 31 +- |
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sci-biology/gbench/ChangeLog | 11 + |
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sci-biology/gbench/Manifest | 4 + |
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sci-biology/gbench/gbench-2.3.2.ebuild | 55 ++ |
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sci-biology/{ONTO-PERL => gbench}/metadata.xml | 0 |
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sci-biology/gbrowse/ChangeLog | 41 ++ |
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sci-biology/gbrowse/Manifest | 13 +- |
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....pm-2.38.patch => GBrowseInstall.pm-2.39.patch} | 0 |
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sci-biology/gbrowse/files/destdir.patch | 92 +++ |
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.../files/disable-gbrowse_metadb_config.pl.patch | 19 + |
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sci-biology/gbrowse/files/fix-PNG-export.patch | 11 + |
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.../gbrowse/files/gbrowse_metadb_config.pl.patch | 55 ++ |
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sci-biology/gbrowse/files/symlink.patch | 11 + |
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sci-biology/gbrowse/gbrowse-2.38.ebuild | 162 ----- |
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sci-biology/gbrowse/gbrowse-2.39.ebuild | 167 ++++++ |
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sci-biology/go-db-perl/Manifest | 3 - |
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sci-biology/go-db-perl/go-db-perl-0.04.ebuild | 23 - |
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sci-biology/sra_sdk/ChangeLog | 9 + |
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sci-biology/sra_sdk/Manifest | 3 +- |
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sci-biology/sra_sdk/sra_sdk-2.0.1.ebuild | 4 +- |
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sci-chemistry/ambertools/ChangeLog | 29 - |
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sci-chemistry/ambertools/Manifest | 20 - |
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sci-chemistry/ambertools/ambertools-1.4.ebuild | 133 ----- |
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sci-chemistry/ambertools/ambertools-1.5.ebuild | 140 ----- |
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.../ambertools/files/ambertools-1.4-gentoo.patch | 289 --------- |
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.../ambertools/files/ambertools-1.5-gentoo.patch | 386 ------------ |
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sci-chemistry/ambertools/metadata.xml | 10 - |
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sci-chemistry/coot/ChangeLog | 7 + |
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sci-chemistry/coot/Manifest | 15 +- |
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sci-chemistry/coot/coot-9999.ebuild | 3 +- |
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sci-chemistry/coot/files/9999-mmdb-config.patch | 20 +- |
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sci-chemistry/coot/files/9999-ssm.patch | 56 ++ |
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sci-chemistry/gromacs/ChangeLog | 4 + |
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sci-chemistry/gromacs/Manifest | 20 +- |
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sci-chemistry/gromacs/gromacs-4.5.9999.ebuild | 6 +- |
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sci-chemistry/gromacs/gromacs-9999.ebuild | 6 +- |
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sci-chemistry/votca-csg-apps/ChangeLog | 10 + |
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sci-chemistry/votca-csg-apps/Manifest | 17 + |
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.../votca-csg-apps}/metadata.xml | 0 |
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.../votca-csg-apps/votca-csg-apps-9999.ebuild | 24 + |
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sci-chemistry/votca-csg-tutorials/ChangeLog | 10 + |
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sci-chemistry/votca-csg-tutorials/Manifest | 17 + |
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.../votca-csg-tutorials}/metadata.xml | 0 |
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.../votca-csg-tutorials-9999.ebuild | 28 + |
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sci-chemistry/votca-csg/ChangeLog | 7 + |
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sci-chemistry/votca-csg/Manifest | 16 +- |
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sci-chemistry/votca-csg/metadata.xml | 5 +- |
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sci-chemistry/votca-csg/votca-csg-9999.ebuild | 29 +- |
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sci-geosciences/cdat-lite/ChangeLog | 7 +- |
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sci-geosciences/cdat-lite/Manifest | 14 +- |
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sci-geosciences/cdat-lite/cdat-lite-6.0_rc2.ebuild | 43 ++ |
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sci-geosciences/swmm/ChangeLog | 8 +- |
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sci-geosciences/swmm/Manifest | 6 +- |
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sci-geosciences/swmm/swmm-5.0.020.ebuild | 51 -- |
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sci-geosciences/swmm/swmm-5.0.022.ebuild | 51 ++ |
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sci-libs/libspatialindex/ChangeLog | 10 + |
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sci-libs/libspatialindex/Manifest | 4 + |
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.../libspatialindex/libspatialindex-1.6.1.ebuild | 26 + |
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sci-libs/libspatialindex/metadata.xml | 5 + |
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sci-libs/libssm/ChangeLog | 13 - |
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sci-libs/libssm/Manifest | 4 - |
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sci-libs/libssm/libssm-1.0.ebuild | 21 - |
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sci-libs/lpsolve/Manifest | 13 - |
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sci-libs/lpsolve/lpsolve-5.5.2.0.ebuild | 54 -- |
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sci-libs/lpsolve/metadata.xml | 5 - |
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sci-libs/msms/Manifest | 13 +- |
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sci-libs/msms/files/build-with-linux-3.0.patch | 11 + |
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sci-libs/msms/msms-1.5.4-r1.ebuild | 12 +- |
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sci-mathematics/gap-guava/ChangeLog | 46 ++ |
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sci-mathematics/gap-guava/Manifest | 5 + |
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.../files/gap-guava-3.10-fix-missing-header.patch | 7 + |
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sci-mathematics/gap-guava/gap-guava-3.10-r1.ebuild | 66 ++ |
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.../gap-guava}/metadata.xml | 0 |
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sci-mathematics/mdp/ChangeLog | 6 + |
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sci-mathematics/mdp/Manifest | 16 +- |
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sci-mathematics/mdp/mdp-2.6-r1.ebuild | 35 -- |
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sci-mathematics/mdp/mdp-3.1.ebuild | 35 ++ |
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sci-mathematics/pest/Manifest | 14 +- |
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sci-physics/fastjet/ChangeLog | 9 + |
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sci-physics/fastjet/Manifest | 4 + |
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sci-physics/fastjet/fastjet-2.4.4.ebuild | 73 +++ |
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sci-physics/fastjet/metadata.xml | 28 + |
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sci-physics/root/ChangeLog | 28 + |
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sci-physics/root/Manifest | 22 + |
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sci-physics/root/files/olbd.confd | 9 + |
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sci-physics/root/files/olbd.initd | 26 + |
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sci-physics/root/files/proofd.confd | 12 + |
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sci-physics/root/files/proofd.initd | 26 + |
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.../root/files/root-5.28.00b-asneeded.patch | 20 + |
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.../root/files/root-5.28.00b-glibc212.patch | 11 + |
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.../root/files/root-5.28.00b-prop-ldflags.patch | 13 + |
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sci-physics/root/files/root-5.28.00b-unuran.patch | 39 ++ |
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sci-physics/root/files/root-5.30.00-lzma.patch | 13 + |
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.../root/files/root-5.30.00-nobyte-compile.patch | 137 +++++ |
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.../files/root-5.30.00-xrootd-prop-flags.patch | 623 ++++++++++++++++++++ |
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sci-physics/root/files/rootd.confd | 8 + |
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sci-physics/root/files/rootd.initd | 28 + |
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sci-physics/root/files/xrootd.confd | 8 + |
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sci-physics/root/files/xrootd.initd | 26 + |
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sci-physics/root/metadata.xml | 31 + |
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sci-physics/root/root-5.30.00.ebuild | 339 +++++++++++ |
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sci-visualization/gnuplot/ChangeLog | 4 + |
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sci-visualization/gnuplot/Manifest | 20 +- |
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sci-visualization/gnuplot/gnuplot-4.4.9999.ebuild | 32 +- |
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sci-visualization/gnuplot/gnuplot-4.5.9999.ebuild | 28 +- |
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sci-visualization/gnuplot/metadata.xml | 6 +- |
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scripts/make_path64_snapshot.sh | 37 ++ |
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sys-cluster/open-mx/Manifest | 25 + |
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sys-cluster/open-mx/files/omxoed.initd | 46 ++ |
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.../open-mx/files/open-mx-1.4.0-driver.patch | 14 + |
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sys-cluster/open-mx/metadata.xml | 9 + |
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sys-cluster/open-mx/open-mx-1.4.0.ebuild | 71 +++ |
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sys-devel/ucpp/ChangeLog | 13 - |
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sys-devel/ucpp/Manifest | 15 - |
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sys-devel/ucpp/files/tune.h.patch | 28 - |
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sys-devel/ucpp/metadata.xml | 8 - |
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sys-devel/ucpp/ucpp-1.3.ebuild | 34 -- |
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sys-fs/ocfs2-tools/Manifest | 31 +- |
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sys-fs/ocfs2-tools/files/ocfs2.confd | 38 ++ |
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.../ocfs2-tools/files/{ocfs2.init => ocfs2.initd} | 0 |
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sys-fs/ocfs2-tools/ocfs2-tools-1.6.4.ebuild | 3 +- |
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193 files changed, 4044 insertions(+), 1777 deletions(-) |
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