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markusle 08/10/06 22:34:28 |
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Added: vienna-rna-1.7.2-LDFLAGS.patch |
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vienna-rna-1.7.2-disable-gd.patch |
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Log: |
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Fixed ignored LDFLAGS issues and bogus detection of GD support. Also enabled the tests that come with the package. |
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(Portage version: 2.2_rc11/cvs/Linux 2.6.26-SENTINEL-2 i686) |
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Revision Changes Path |
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1.1 sci-biology/vienna-rna/files/vienna-rna-1.7.2-LDFLAGS.patch |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/files/vienna-rna-1.7.2-LDFLAGS.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/files/vienna-rna-1.7.2-LDFLAGS.patch?rev=1.1&content-type=text/plain |
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Index: vienna-rna-1.7.2-LDFLAGS.patch |
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=================================================================== |
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diff -Naur ViennaRNA-1.7.2/Perl/Makefile.am ViennaRNA-1.7.2.new/Perl/Makefile.am |
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--- ViennaRNA-1.7.2/Perl/Makefile.am 2007-12-19 05:33:14.000000000 -0500 |
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+++ ViennaRNA-1.7.2.new/Perl/Makefile.am 2008-10-06 14:20:54.000000000 -0400 |
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@@ -4,7 +4,7 @@ |
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RNA.i tmaps.i |
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Makefile.perl: Makefile.PL Makefile |
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- @PerlCmd@ Makefile.PL |
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+ @PerlCmd@ Makefile.PL LDDLFLAGS="${LDFLAGS} -shared" |
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# the perl command repairs some errors in the SWIG CVS version |
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RNA_wrap.c: RNA.i tmaps.i |
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diff -Naur ViennaRNA-1.7.2/Readseq/Makefile ViennaRNA-1.7.2.new/Readseq/Makefile |
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--- ViennaRNA-1.7.2/Readseq/Makefile 2008-01-23 05:32:00.000000000 -0500 |
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+++ ViennaRNA-1.7.2.new/Readseq/Makefile 2008-10-06 14:21:13.000000000 -0400 |
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@@ -40,7 +40,7 @@ |
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build: $(SOURCES) |
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@echo "Compiling readseq..." |
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- $(CC) $(CFLAGS) -o readseq readseq.c ureadseq.c |
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+ $(CC) $(LDFLAGS) $(CFLAGS) -o readseq readseq.c ureadseq.c |
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# if using NCBI, uncomment these lines in place of build: above |
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#build: $(SOURCES) |
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1.1 sci-biology/vienna-rna/files/vienna-rna-1.7.2-disable-gd.patch |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/files/vienna-rna-1.7.2-disable-gd.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/files/vienna-rna-1.7.2-disable-gd.patch?rev=1.1&content-type=text/plain |
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Index: vienna-rna-1.7.2-disable-gd.patch |
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=================================================================== |
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# unfortunately, vienna-rna's build system is a little broken and sometimes detects |
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# gd in RNAforested but then realizes in g2 that it can't actually build it |
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# resulting in unresolved symbols. |
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diff -Naur ViennaRNA-1.7.2/RNAforester/configure.in ViennaRNA-1.7.2.new/RNAforester/configure.in |
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--- ViennaRNA-1.7.2/RNAforester/configure.in 2006-01-19 10:26:09.000000000 -0500 |
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+++ ViennaRNA-1.7.2.new/RNAforester/configure.in 2008-10-06 14:08:56.000000000 -0400 |
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@@ -31,7 +31,7 @@ |
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CPPFLAGS=["-Ig2-0.70/src/ -Lg2-0.70/ ${CPPFLAGS}"] |
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-AC_CHECK_LIB(gd,gdImageLine,,) |
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+dnl AC_CHECK_LIB(gd,gdImageLine,,) |
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dnl Checks for header files. |
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AC_HEADER_STDC |
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