[gentoo-commits] proj/sci:master commit in: sci-biology/cluster/

[Justin Lecher]

commit:     8927b259cb574e45ed114fc99fdbd4d3726bbb4d
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Jun  7 15:20:49 2012 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Jun  7 15:20:49 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8927b259

sci-biology/cluster: Rename cluster to cluster3, #419999

(Portage version: 2.2.0_alpha110/git/Linux x86_64, unsigned Manifest commit)

---
 sci-biology/cluster/ChangeLog              |    5 ++
 sci-biology/cluster/cluster-1.50-r1.ebuild |   56 ++++++++++++++++++++++++++++
 2 files changed, 61 insertions(+), 0 deletions(-)

diff --git a/sci-biology/cluster/ChangeLog b/sci-biology/cluster/ChangeLog
index df03336..b0888e5 100644
--- a/sci-biology/cluster/ChangeLog
+++ b/sci-biology/cluster/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*cluster-1.50-r1 (07 Jun 2012)
+
+  07 Jun 2012; Justin Lecher <jlec@g.o> +cluster-1.50-r1.ebuild:
+  Rename cluster to cluster3, #419999
+
 *cluster-1.50 (24 May 2012)
 
   24 May 2012; Justin Lecher <jlec@g.o> -cluster-1.38.ebuild,

diff --git a/sci-biology/cluster/cluster-1.50-r1.ebuild b/sci-biology/cluster/cluster-1.50-r1.ebuild
new file mode 100644
index 0000000..85fb43b
--- /dev/null
+++ b/sci-biology/cluster/cluster-1.50-r1.ebuild
@@ -0,0 +1,56 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+DESCRIPTION="Clustering software for microarray analysis"
+HOMEPAGE="http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv"
+SRC_URI="${P}.tar.gz"
+
+LICENSE="Eisen"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="X"
+
+DEPEND="X? ( x11-libs/openmotif )"
+RDEPEND="
+	!>=media-gfx/graphviz-2.28.0
+	X? ( x11-misc/xdg-utils app-text/mupdf )"
+
+RESTRICT="fetch"
+
+pkg_nofetch() {
+	einfo "Please obtain ${P}.tar.gz from ${HOMEPAGE} and place it in ${DISTDIR}"
+}
+
+src_prepare() {
+	sed -i \
+		-e 's:^docdir = .*$:docdir = @docdir@:' \
+		-e 's:^htmldir = .*$:htmldir = @htmldir@:' \
+		-e 's:^imagedir = .*$:imagedir = @htmldir@/images:' \
+		-e 's:^fileformatdir = .*$:fileformatdir = @docdir@:' \
+		X11/Makefile.in || die "sed failed"
+}
+
+src_configure() {
+	econf \
+		$(use_with X x) \
+		--docdir="/usr/share/doc/${P}" \
+		--htmldir="/usr/share/doc/${P}/html"
+}
+
+src_install() {
+	default
+
+	mv "${ED}"/usr/bin/cluster{,3}
+
+	insinto /usr/share/doc/${P}/examples
+	doins example/example.c example/README
+	insinto /usr/share/doc/${PR}
+	doins doc/cluster.pdf
+}
+
+pkg_postinst() {
+	elog "We renamed the cluster binary to cluster3"
+}