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markusle 08/10/06 22:34:27 |
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Modified: ChangeLog vienna-rna-1.7.2.ebuild |
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Log: |
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Fixed ignored LDFLAGS issues and bogus detection of GD support. Also enabled the tests that come with the package. |
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(Portage version: 2.2_rc11/cvs/Linux 2.6.26-SENTINEL-2 i686) |
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Revision Changes Path |
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1.18 sci-biology/vienna-rna/ChangeLog |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.18&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.18&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.17&r2=1.18 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v |
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retrieving revision 1.17 |
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retrieving revision 1.18 |
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diff -u -r1.17 -r1.18 |
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--- ChangeLog 29 Aug 2008 01:21:38 -0000 1.17 |
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+++ ChangeLog 6 Oct 2008 22:34:27 -0000 1.18 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/vienna-rna |
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# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.17 2008/08/29 01:21:38 markusle Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.18 2008/10/06 22:34:27 markusle Exp $ |
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+ |
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+ 06 Oct 2008; Markus Dittrich <markusle@g.o> |
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+ +files/vienna-rna-1.7.2-LDFLAGS.patch, |
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+ +files/vienna-rna-1.7.2-disable-gd.patch, vienna-rna-1.7.2.ebuild: |
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+ Fixed ignored LDFLAGS issues and bogus detection of GD support. Also |
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+ enabled the tests that come with the package. |
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|
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*vienna-rna-1.7.2 (28 Aug 2008) |
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1.2 sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?r1=1.1&r2=1.2 |
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|
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Index: vienna-rna-1.7.2.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- vienna-rna-1.7.2.ebuild 29 Aug 2008 01:21:38 -0000 1.1 |
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+++ vienna-rna-1.7.2.ebuild 6 Oct 2008 22:34:27 -0000 1.2 |
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@@ -1,8 +1,8 @@ |
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# Copyright 1999-2008 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild,v 1.1 2008/08/29 01:21:38 markusle Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild,v 1.2 2008/10/06 22:34:27 markusle Exp $ |
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-inherit toolchain-funcs multilib eutils versionator |
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+inherit toolchain-funcs multilib eutils versionator autotools |
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DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison" |
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LICENSE="vienna-rna" |
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@@ -23,6 +23,13 @@ |
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cd "${S}" |
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epatch "${FILESDIR}"/${PN}-1.6.5-c-fixes.patch |
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epatch "${FILESDIR}"/${P}-gcc4.3.patch |
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+ epatch "${FILESDIR}"/${P}-LDFLAGS.patch |
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+ epatch "${FILESDIR}"/${P}-disable-gd.patch |
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+ eautoreconf |
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+ |
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+ # we need a separate eautoreconf in RNAforester |
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+ cd RNAforester |
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+ eautoreconf |
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} |
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src_compile() { |
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@@ -36,10 +43,15 @@ |
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cd "${S}"/Readseq |
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sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \ |
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-i Makefile || die "Failed patching readseq Makefile." |
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- make || die "Failed to compile readseq." |
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+ emake || die "Failed to compile readseq." |
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# TODO: Add (optional?) support for the NCBI toolkit. |
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} |
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+src_test() { |
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+ cd "${S}"/Perl && emake check || die "Perl tests failed" |
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+ cd "${S}"/Readseq && emake test || die "Readseq tests failed" |
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+} |
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+ |
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src_install() { |
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make install DESTDIR="${D}" || die "Installation failed." |
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dodoc AUTHORS ChangeLog NEWS README THANKS \ |
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