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On 08/21/2011 03:24 PM, Christopher Schwan wrote: |
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> On Saturday 20 August 2011 21:23:01 P Purkayastha wrote: |
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>> Hi, |
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>> I was updating world today and the following packages failed: |
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>> |
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>> 1. sci-chemistry/jmol-applet-12.0.45-r1 and sci-chemistry/jmol-12.0.45 |
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>> failed to compile.The errors are almost the same for both the packages. |
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>> |
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>> 2. sci-mathematics/sage-doc-4.7.1 failed with a digest failure. |
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>> |
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>> |
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>> The build logs are attached with this email. |
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>> |
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>> My emerge --info is given below. Please let me know if you need any further |
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>> information. |
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>> |
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>> Portage 2.2.0_alpha51 (default/linux/amd64/10.0/desktop/kde, gcc-4.4.5, |
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>> glibc-2.12.2-r0, 2.6.38-gentoo-r6 x86_64) |
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>> ================================================================= |
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>> System uname: Linux-2.6.38-gentoo-r6-x86_64-Intel-R-_Core-TM-_i5_CPU_M_460_@ |
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>> _2.53GHz-with-gentoo-2.0.3 |
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>> Timestamp of tree: Sat, 20 Aug 2011 11:30:02 +0000 |
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>> app-shells/bash: 4.1_p9 |
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>> dev-java/java-config: 2.1.11-r3 |
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>> dev-lang/python: 2.7.1-r1::sage-on-gentoo, 3.1.3-r1 |
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>> dev-util/cmake: 2.8.4-r1 |
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>> dev-util/pkgconfig: 0.26 |
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>> sys-apps/baselayout: 2.0.3 |
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>> sys-apps/openrc: 0.8.3-r1 |
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>> sys-apps/sandbox: 2.4 |
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>> sys-devel/autoconf: 2.13, 2.68 |
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>> sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 |
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>> sys-devel/binutils: 2.20.1-r1 |
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>> sys-devel/gcc: 4.4.5 |
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>> sys-devel/gcc-config: 1.4.1-r1 |
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>> sys-devel/libtool: 2.4-r1 |
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>> sys-devel/make: 3.82 |
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>> sys-kernel/linux-headers: 2.6.38 (virtual/os-headers) |
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>> sys-libs/glibc: 2.12.2 |
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>> Repositories: gentoo enlightenment sage-on-gentoo myself |
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>> Installed sets: |
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>> ACCEPT_KEYWORDS="amd64" |
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>> ACCEPT_LICENSE="*" |
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>> CBUILD="x86_64-pc-linux-gnu" |
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>> CFLAGS="-march=native -O2 -pipe" |
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>> CHOST="x86_64-pc-linux-gnu" |
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>> CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt |
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>> /usr/share/xsessions" |
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>> CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ |
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>> /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild |
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>> /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d |
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>> /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" |
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>> CXXFLAGS="-march=native -O2 -pipe" |
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>> DISTDIR="/usr/portage/distfiles" |
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>> EMERGE_DEFAULT_OPTS="--with-bdeps=y" |
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>> FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles |
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>> fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms |
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>> strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" |
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>> FFLAGS="" |
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>> GENTOO_MIRRORS="http://distfiles.gentoo.org" |
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>> LANG="en_US.UTF8" |
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>> LC_ALL="en_US.UTF-8" |
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>> LDFLAGS="-Wl,-O1 -Wl,--as-needed" |
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>> LINGUAS="en en_US" |
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>> MAKEOPTS="-j2" |
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>> PKGDIR="/usr/portage/packages" |
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>> PORTAGE_CONFIGROOT="/" |
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>> PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times |
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>> --compress --force --whole-file --delete --stats --timeout=180 |
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>> --exclude=/distfiles --exclude=/local --exclude=/packages" |
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>> PORTAGE_TMPDIR="/var/tmp" |
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>> PORTDIR="/usr/portage" |
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>> PORTDIR_OVERLAY="/var/lib/layman/enlightenment |
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>> /var/lib/layman/sage-on-gentoo /usr/local/portage" |
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>> SYNC="rsync://rsync.gentoo.org/gentoo-portage" |
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>> USE="X a52 aac accessibility acl acpi akonadi alsa amd64 bash-completion |
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>> berkdb branding bzip2 cairo cdda cddb cdr cli consolekit cracklib crypt cups |
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>> curl curlwrappers cxx dbus declarative djvu dri dts dvd dvdr encode exif |
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>> fam fbcon ffmpeg flac fontconfig ftp fuse gdbm gdu gif gnutls gphoto2 gpm |
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>> gstreamer gtk iconv ieee1394 imagemagick jpeg kipi lame latex lcms ldap |
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>> libsamplerate lzma mad mmap mmx mmx2 mng modules mp3 mp4 mpeg mudflap |
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>> multilib musepack ncurses networkmanager nls nptl nptlonly ogg opengl |
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>> openmp oss pam pango pch pcmcia pcre pdf perl phonon plasma png policykit |
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>> ppds pppd python qt3support qt4 readline savedconfig sdl session smp speex |
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>> spell sqlite srt sse sse2 ssl ssse3 svg sysfs system-sqlite taglib tcpd |
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>> theora threads tiff truetype udev unicode usb v4l v4l2 vdpau vim-syntax |
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>> vorbis wicd wifi wmf x264 xattr xcf xcomposite xft xinerama xml xorg xosd |
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>> xpm xulrunner xv xvid xvmc yv12 zeroconf zlib zsh-completion" |
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>> ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare |
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>> dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter |
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>> mmap_emul mulaw multi null plug rate route share shm softvol" |
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>> APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm |
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>> authn_default authn_file authz_dbm authz_default authz_groupfile authz_host |
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>> authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate |
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>> dir disk_cache env expires ext_filter file_cache filter headers include |
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>> info log_config logio mem_cache mime mime_magic negotiation rewrite |
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>> setenvif speling status unique_id userdir usertrack vhost_alias" |
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>> CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump |
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>> active" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool |
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>> swap syslog" ELIBC="glibc" |
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>> GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt |
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>> gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore |
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>> rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" |
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>> INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" |
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>> LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb |
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>> ncurses text" LINGUAS="en en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" |
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>> USERLAND="GNU" VIDEO_CARDS="nvidia vesa" XTABLES_ADDONS="quota2 psd pknock |
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>> lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit |
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>> sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" |
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>> Unset: CPPFLAGS, CTARGET, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, |
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>> PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS |
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> |
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> Hi, |
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> |
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> Francois fixed the problem with sage-doc's Manifest. I wasnt able to produce |
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> the problems with jmol. I first tried icedtea6-bin until I saw you are using |
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> sun-jdk. However, that did not produce the (un)desired result. Do you have any |
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> ideas, Francois? |
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> |
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> To circumvent the problems with jmol, compile sage-notebook without java |
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> (USE=-java). You wont be able to plot in 3d though. |
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> |
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> Cheers, |
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> Christopher |
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> |
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|
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It seems Francois is unable to post to the ML. So, here's my reply that |
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I sent to him earlier this day, in order to document my problem in the ML. |
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|
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Hi Francois, |
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|
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I didn't have ant-nodeps installed. Perhaps no package pulled it in? |
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Also, I had changed my jdk from icedtea to sun-jdk a few weeks ago and |
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it seems ant-core was merged before the switch of jdk's. |
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|
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All of them have merged successfully now. Thanks for your help. |
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punarbasu. |