Gentoo Archives: gentoo-science

From: fbissey@××××××××××××.nz
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] sci-mathematics/sage-4.7.1 and numpy version
Date: Wed, 24 Aug 2011 22:30:02
Message-Id: 20110825102453.8rso4gcssok4888w@webmail.slingshot.co.nz
In Reply to: Re: [gentoo-science] sci-mathematics/sage-4.7.1 and numpy version by Steven Trogdon
1 Quoting Steven Trogdon <strogdon@×××××.edu>:
2
3 > On Wed, 24 Aug 2011 12:03:19 +0200
4 > rose@××××××××××××××.de wrote:
5 >
6 >> Hi,
7 >>
8 >> I just installed more or less succesful sage. During the
9 >> installation numpy was downgraded from numpy-1.6.1 to numpy-1.5.1.
10 >> Now every 'emerge -uvDN world' complaines about;
11 >>
12 >> WARNING: One or more updates have been skipped due to a dependency conflict:
13 >>
14 >> dev-python/numpy:0
15 >>
16 >> (dev-python/numpy-1.6.1::gentoo, ebuild scheduled for merge)
17 >> conflicts with
18 >> ~dev-python/numpy-1.5.1 required by
19 >> (sci-mathematics/sage-4.7.1::sage-on-gentoo, installed)
20 >>
21 >> dev-python/pexpect:0
22 >>
23 >> (dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for
24 >> merge) conflicts with
25 >> ~dev-python/pexpect-2.0 required by
26 >> (sci-mathematics/sage-4.7.1::sage-on-gentoo, installed)
27 >>
28 >> If I try to install couchdb, numpy-1.6.1 will be installed again:
29 >>
30 >> root@caiman:/root(4)# emerge -pvuDN couchdb
31 >>
32 >> These are the packages that would be merged, in order:
33 >>
34 >> Calculating dependencies... done!
35 >> [ebuild N ] dev-lang/erlang-14.2.3 USE="doc emacs java odbc
36 >> smp ssl tk wxwidgets -halfword -hipe -kpoll -sctp" 98,075 kB
37 >> [ebuild N ] dev-db/couchdb-1.1.0 USE="-test" 1,063 kB
38 >> [ebuild U ] dev-python/numpy-1.6.1 [1.5.1] USE="doc lapack -test" 0 kB
39 >>
40 >> Should I mask numpy-1.6.1 or how are the chances that sage will work
41 >> with numpy-1.6.1?
42 >>
43 > At least until this Bug
44 >
45 > https://bugs.gentoo.org/show_bug.cgi?id=371099
46 >
47 > is resolved (sog) sage requires ~numpy-1.5.1
48 >
49 > I'm not sure exactly the impact on your system of masking
50 > >=numpy-1.6.0 but you
51 > could try that and see what emerge -puDNv world gives. I don't see which
52 > component, if any, of couchdb is pulling in numpy or where else numpy is
53 > needed on your system. Oh, and you will also have to mask >=pexpect-2.4
54 >
55 Hi all,
56
57 Sorry I needed to have a little break. numpy-1.6+ is not compatible with sage
58 at the moment:
59 http://trac.sagemath.org/sage_trac/ticket/11334
60 so don't try it. I suspect numpy wants to upgrade to 1.6.1 for you for the
61 following reason:
62 1) you put numpy in your package.keywords file
63 2) numpy is part of your world set. It is upgraded independently of any
64 dependency requirement. The fact that it is pulled just by -D is
65 somewhat a bug
66 in portage - although there could be a web of dependencies leading to numpy.
67 emerge -puNv couchdb probably won't pick it.
68
69 If you downgraded from numpy-1.6.x to 1.5.1 don't forget to rebuild scipy.
70
71 Francois

Replies

Subject Author
Re: [gentoo-science] sci-mathematics/sage-4.7.1 and numpy version P Purkayastha <ppurka@×××××.com>