Gentoo Archives: gentoo-science

From: Steven Trogdon <strogdon@×××××.edu>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] sci-mathematics/sage-4.7.1 and numpy version
Date: Fri, 26 Aug 2011 21:54:27
Message-Id: CAL52bMn=8y69xWV=TSYEXhdtZevDoZn8gJY2DhmBEjxOyGhO=Q@mail.gmail.com
1 On Thu, 25 Aug 2011 19:22:17 +0200
2 Juergen Rose <rose@××××××××××××××.de> wrote:
3
4 > Am Donnerstag, den 25.08.2011, 00:21 +0200 schrieb
5 > rose@××××××××××××××.de:
6 >
7 > ..
8 > > File
9 > > "/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py",
10 > > line 461, in get_info
11 > > raise self.notfounderror(self.notfounderror.__doc__)
12 > > numpy.distutils.system_info.BlasNotFoundError:
13 > > Blas (http://www.netlib.org/blas/) libraries not found.
14 > > Directories to search for the libraries can be specified in the
15 > > numpy/distutils/site.cfg file (section [blas]) or by setting
16 > > the BLAS environment variable.
17 > > * ERROR: sci-libs/scipy-0.9.0-r1 failed (compile phase):
18 > > * Building failed with CPython 3.2 in distutils_building() function
19 > >
20 > >
21 > > USE_PYTHON="2.7" 'emerge -v1 scipy'
22 >
23 > My last mail was not complete. I wanted to say 'emerge -v1 scipy' fails
24 > after downgrading numpy, but 'USE_PYTHON="2.7" emerge -v1 scipy' works.
25 >
26 > And I reemerged also matplotlib, but as described in an other thread
27 >
28 > sage -testall
29 >
30 > still generates still between about 150 and 220 errors.
31 >
32 > Regards
33 >
34 >
35 >
36
37 Juergen,
38
39 Do you by chance have singular-3.1.3.1 or any other singular except the sog
40 singular (singular-3.1.1.4-r1) installed. If so, you should install the sog
41 singular. When I have an incorrect singular installed I get things like:
42
43 sage -t -force_lib "devel/sage/doc/fr/tutorial/tour_advanced.rst"
44 // ** Could not open dynamic library: /usr/lib/singular/p_Procs_FieldQ.so
45 // ** Error message from system: /usr/lib/singular/p_Procs_FieldQ.so:
46 undefined symbol: _Z17nlShort3_noinlineP7snumber
47 // ** Singular will work properly, but much slower.
48 // ** See the INSTALL section in the Singular manual for details.
49
50 which appear in your sage_test_impala.log file. This will not cure all your
51 problems but perhaps is a start. I suspect, for some reason, you have
52 unstable packages installed that do not play well with sage (my guess).
53 Could you post the output of
54
55 Tools/list-compare-deps sci-mathematics/sage
56
57 Tools is a folder under the sog overlay. I believe the tool still reports
58 things correctly. This may give an indication of what you have installed.
59
60 Steve

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