Gentoo Archives: gentoo-science

From: Christopher Schwan <cschwan@××××××××××××××××××.de>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] Can not run sage-notebook
Date: Mon, 22 Aug 2011 08:56:50
Message-Id: 4310572.Ch0ui68j1t@cschwan-laptop
In Reply to: Re: [gentoo-science] Can not run sage-notebook by P Purkayastha
1 On Monday 22 August 2011 10:57:59 P Purkayastha wrote:
2 > On 08/22/2011 07:59 AM, fbissey@××××××××××××.nz wrote:
3 > > Quoting P Purkayastha <ppurka@×××××.com>:
4 > >> On 08/22/2011 06:48 AM, fbissey@××××××××××××.nz wrote:
5 > >>> Quoting P Purkayastha <ppurka@×××××.com>:
6 > >>>> Indeed cython was not rebuilt after/during the update of sage.
7 > >>>> Rebuilding it doesn't make any difference. Still get the same
8 > >>>> errors.
9 > >>>> eix output just before remerging cython:
10 > >>>>
11 > >>>> [I] dev-python/cython
12 > >>>> Available versions: 0.14.1 0.14.1-r1[1] {doc examples}
13 > >>>> Installed versions: 0.14.1-r1[1](10:34:40 PM 08/05/2011)(-doc
14 > >>>> -examples)
15 > >>>> Homepage: http://www.cython.org/
16 > >>>> http://pypi.python.org/pypi/Cython
17 > >>>> Description: The Cython compiler for writing C extensions
18 > >>>> for the Python language
19 > >>>
20 > >>> Did you follow up with a rebuild of pynac, sage-clib and sage?
21 > >>>
22 > >>> Francois
23 > >>
24 > >> I haev tried rebuilding pynac, sage-clib, sage, sage-baselayout and
25 > >> sage-notebook. The error persists.
26 > >>
27 > >>
28 > >> ~> genlop -l --date 3 hours ago
29 > >> * dev-python/cython
30 > >>
31 > >> Mon Aug 22 06:05:25 2011 >>> dev-python/cython-0.14.1-r1
32 > >> Mon Aug 22 06:56:32 2011 >>> sci-libs/pynac-0.2.3
33 > >> Mon Aug 22 06:56:58 2011 >>> sci-mathematics/sage-clib-4.7.1
34 > >> Mon Aug 22 07:09:34 2011 >>> sci-mathematics/sage-4.7.1
35 > >> Mon Aug 22 07:12:48 2011 >>> dev-lang/yasm-1.1.0-r1
36 > >> Mon Aug 22 07:14:55 2011 >>> sci-mathematics/sage-notebook-0.8.19
37 > >> Mon Aug 22 07:15:30 2011 >>> sci-mathematics/sage-baselayout-4.7.1
38 > >> ~>
39 > >
40 > > OK let's look at some other things:
41 > > printenv | grep SAGE
42 >
43 > ~> env | grep SAGE
44 > SAGE_DATA=/usr/share/sage/data
45 > SAGE_DOC=/usr/share/sage/devel/sage/doc
46 > SAGE_ROOT=/usr/share/sage
47 > SAGE_LOCAL=/usr
48 >
49 > > eix ipython
50 >
51 > ~> eix ipython
52 > [I] dev-python/ipython
53 > Available versions: 0.10 0.10.1 0.10.2 {doc emacs examples
54 > gnuplot readline smp test wxwidgets}
55 > Installed versions: 0.10.2(02:29:03 AM 05/20/2011)(readline smp
56 > -doc -emacs -examples -gnuplot -test -wxwidgets)
57 > Homepage: http://ipython.scipy.org/
58 > http://pypi.python.org/pypi/ipython
59 > Description: An interactive computing environment for Python
60 >
61 > > What is your current shell?
62 >
63 > /bin/zsh
64 > Running
65 > exec bash
66 > sage
67 >
68 > doesn't make any difference.
69 >
70 > > Outout of "sage -gdb" if you installed with the debug useflag.
71 > > Did you install the testsuite (useflag of the same name).
72 >
73 > Unfortunately, I didnt' compile either of them. Will do that later tonight.
74 >
75 > > Francois
76 >
77 > Thanks for patiently helping. :)
78
79 Hi,
80
81 Francois was right - compiling without the testsuite yields the same behavior
82 on my box. So for the time being,
83
84 USE=testsuite emerge -1 sage-baselayout
85 USE=testsuite emerge -1 sage
86
87 solves the problem.
88
89 Any ideas which files are removed with USE=-testsuite but still needed ?
90
91 Cheers,
92 Christopher

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Re: [gentoo-science] Can not run sage-notebook P Purkayastha <ppurka@×××××.com>