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On Fri, 01 Jun 2012 23:13:58 Thomas Kahle wrote: |
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> On 07:26 Sat 02 Jun 2012, Francois Bissey wrote: |
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> > On Fri, 01 Jun 2012 11:52:24 Thomas Kahle wrote: |
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> > > Hi, |
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> > > |
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> > > now that I have sage-on-gentoo installed I can't do world updates with |
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> > > the -D option anymore. Looks like a portage quirk to me. |
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> > > |
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> > > There seem to be at least two problems: |
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> > > |
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> > > I have sci-mathematics/singular in my world file and the -D option |
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> > > forces portage to think that I insist on the latest version. Therefore |
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> > > it collides with sage-on-gentoo insisting on 3.1.3: |
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> > > |
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> > > sci-mathematics/singular:0 |
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> > > |
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> > > (sci-mathematics/singular-3.1.3.3::gentoo, installed) pulled in by |
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> > > |
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> > > ~sci-mathematics/singular-3.1.3.3 required by |
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> > > |
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> > > (sci-mathematics/sage-5.0-r1::sage-on-gentoo, installed) |
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> > > |
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> > > (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for |
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> > > merge) |
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> > > |
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> > > pulled in by (no parents that aren't satisfied by other packages in this |
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> > > slot) |
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> > > |
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> > > |
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> > > There also is an eselect issue. I don't know why, but eselect-blas and |
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> > > eselect-lapack are pulled in, although blocked by the new gsl: |
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> > > |
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> > > [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is |
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> > > blocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) |
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> > > [blocks B |
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> > > |
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> > > ] app-admin/eselect-lapack ("app-admin/eselect-lapack" is blocking |
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> > > |
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> > > sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) |
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> > > |
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> > > However, without the -D option I just get a warning: |
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> > > |
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> > > WARNING: One or more updates have been skipped due to a dependency |
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> > > conflict: |
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> > > |
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> > > sci-mathematics/singular:0 |
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> > > |
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> > > (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for |
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> > > merge) |
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> > > |
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> > > conflicts with ~sci-mathematics/singular-3.1.3.3 required by |
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> > > (sci-mathematics/sage-5.0-r1::sage-on-gentoo, installed) |
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> > > |
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> > > |
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> > > Any ideas? Shall I carry this to the portage mailing list? |
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> > > Cheers, |
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> > |
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> > We need to know what pulls these eselect modules. What is the portage |
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> > output when you add the "t" option. It should show what wants what. |
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> |
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> Goes back to dev-lang/R and sci-libs/superlu. My setup has superlu |
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> stable, but R keyworded ~amd64 the entire slot. |
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> |
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> [ebuild U ~] sci-mathematics/singular-3.1.4-r1 [3.1.3.3] USE="boost doc |
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> emacs python%* readline -examples -test" 0 kB [nomerge ] |
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> dev-lang/R-2.15.0 USE="X bash-completion cairo doc java jpeg lapack nls |
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> openmp perl png readline tiff tk -icu -minimal -profile -static-libs" |
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> [nomerge ] virtual/lapack-3.1 |
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> [nomerge ] sci-libs/lapack-reference-3.1.1-r1 USE="-doc" |
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> [ebuild N ] app-admin/eselect-lapack-0.1 0 kB |
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> [nomerge ] sci-mathematics/sage-5.0-r1::sage-on-gentoo USE="latex |
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> -testsuite" [nomerge ] sci-libs/scipy-0.9.0-r1 USE="-doc -umfpack" |
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> [nomerge ] sci-libs/superlu-4.1-r1 USE="-doc -examples -static-libs |
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> -test" [nomerge ] virtual/blas-1.0 |
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> [nomerge ] sci-libs/blas-reference-20070226 USE="-doc" |
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> [ebuild N ] app-admin/eselect-blas-0.1 0 kB |
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> [nomerge ] sci-mathematics/sage-5.0-r1::sage-on-gentoo USE="latex |
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> -testsuite" [nomerge ] dev-python/sympy-0.7.1 USE="gtk latex opengl |
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> pdf png -doc -examples -imaging -ipython -mathml -pyglet -test -texmacs" |
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> [ebuild U ] dev-python/pexpect-2.4::gentoo [2.0-r1::sage-on-gentoo] |
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> USE="-doc% -examples%" 0 kB [blocks B ] app-admin/eselect-lapack |
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> ("app-admin/eselect-lapack" is blocking sci-libs/gsl-1.15-r2, |
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> sci-libs/cblas-reference-20110218) [blocks B ] app-admin/eselect-blas |
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> ("app-admin/eselect-blas" is blocking sci-libs/gsl-1.15-r2, |
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> sci-libs/cblas-reference-20110218) |
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> |
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You have the virtual/{blas,lapack} from the main tree not from the science |
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overlay! Now I am not sure why eselect-blas blocks gsl which gives you cblas. |
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Anyway keyword virtual/{blas,cblas,lapack} and upgrade them. Then let's see |
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if you still have troubles. |
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|
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Francois |