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Hi, |
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|
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I think I have found something. Doing exactly what I did on a 32bit machine works. But on my 64bit server, it does exactly the errors written below. Do you have a 32 or 64 machine? Oh and I don't know if the link can affect that... |
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|
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$ ls -lh /usr/ |
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[...] |
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lrwxrwxrwx 1 root root 5 Jan 9 05:15 lib -> lib64 |
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drwxr-xr-x 17 root root 19K Jan 11 11:05 lib32 |
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drwxr-xr-x 102 root root 62K Jan 25 15:55 lib64 |
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Thanks. |
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-----Original Message----- |
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From: Honza Machácek [mailto:Hloupy.Honza@×××××××.cz] |
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Sent: Fri 2008-01-25 15:16 |
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To: gentoo-science@l.g.o |
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Subject: Re: [gentoo-science] liblapack.so.3 not found |
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|
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Alexandre Racine wrote: |
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|
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> ... |
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> lrwxrwxrwx 1 root root 36 Jan 25 10:10 /usr/lib/liblapack.so.3 -> |
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> /usr/lib/lapack/atlas/liblapack.so.0.0.0 |
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> |
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> Starting the program again, I get this: |
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> |
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> $ ./smartpca |
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> ./smartpca: error while loading shared libraries: liblapack.so.3: cannot |
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> open shared object file: No such file or directory |
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|
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Are you sure it does exactly that? |
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I cannot reproduce it. Whether I link /usr/lib/liblapack.so.3 to |
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/usr/lib/liblapack.so.0 or directly to |
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/usr/lib/lapack/atlas/liblapack.so.0.0.0 as you did, I get libblas.so.3, |
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not liblapack.so.3 not found. After linking /usr/lib/libblas.so.3 to |
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/usr/lib/libblas.so.0 I start smartpca without problem: |
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|
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> ./smartpca |
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./smartpca: error while loading shared libraries: liblapack.so.3: cannot |
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open shared object file: No such file or directory |
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> sudo ln -s /usr/lib/liblapack.so.0 /usr/lib/liblapack.so.3 |
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> ./smartpca |
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./smartpca: error while loading shared libraries: libblas.so.3: cannot |
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open shared object file: No such file or directory |
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> sudo ln -s /usr/lib/libblas.so.0 /usr/lib/libblas.so.3 |
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> ./smartpca |
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no parameters |
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## smartpca version: 7521 |
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|
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You can avoid such ugly symbolic links, if you compile the sources. |
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With the help of `pkg-config --libs lapack` I adapted Makefile.alt to |
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the attached Makefile.gcc4 and compiled the sources: |
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> make -f Makefile.gcc4 all |
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For now I don't feel like to pay those extra ten to sixty minutes to |
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write something like a first version of an ebuild, but I thing that it |
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might be quite straitforward. |
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With best regards |
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Honza Machácek |
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