Gentoo Logo
Gentoo Spaceship




Note: Due to technical difficulties, the Archives are currently not up to date. GMANE provides an alternative service for most mailing lists.
c.f. bug 424647
List Archive: gentoo-science
Navigation:
Lists: gentoo-science: < Prev By Thread Next > < Prev By Date Next >
Headers:
To: gentoo-science@g.o
From: Francois Bissey <fbissey@...>
Subject: Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
Date: Tue, 7 Jun 2011 07:33:27 +1200
> EL Sat, 4 Jun 2011 12:15:18 +1200
> 
> ls -la /usr/lib64/libcblas.so
> lrwxrwxrwx 1 root root 26  2 jun 13:44 /usr/lib64/libcblas.so ->
> blas/reference/libcblas.so
> 
> ls -la /usr/lib64/libblas.so
> lrwxrwxrwx 1 root root 25  2 jun 13:43 /usr/lib64/libblas.so ->
> blas/reference/libblas.so
> 
> ls -la /usr/lib64/liblapack.so
> lrwxrwxrwx 1 root root 29  2 jun 13:47 /usr/lib64/liblapack.so ->
> lapack/reference/liblapack.so
> 
> It looks reasonable to me.
It does. Yet your scipy doesn't link to anything blas related according
to the output of ldd that you sent. 
I note you are using numpy-1.6.0 I don't if that's linked to that but sage
will not work properly with it: 
http://trac.sagemath.org/sage_trac/ticket/11334
Can you try again with numpy-1.5.1 at least.
And then what are the outputs of:
ldd /usr/lib64/python2.7/site-packages/numpy/core/_dotblas.so
ldd /usr/lib64/python2.7/site-packages/numpy/linalg/lapack_lite.so

Francois


Replies:
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Marc Vinyals
References:
sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Marc Vinyals
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Francois Bissey
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Marc Vinyals
Navigation:
Lists: gentoo-science: < Prev By Thread Next > < Prev By Date Next >
Previous by thread:
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
Next by thread:
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
Previous by date:
Re: [patch] system-wide install of debug_gap.vim can not be overridden
Next by date:
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv


Updated Jul 05, 2012

Summary: Archive of the gentoo-science mailing list.

Donate to support our development efforts.

Copyright 2001-2013 Gentoo Foundation, Inc. Questions, Comments? Contact us.