Gentoo Archives: gentoo-science

From: Andrey Kislyuk <kislyuk@××××××.edu>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] sci-biology/blast-db fails digest verification
Date: Thu, 16 Jul 2009 19:20:23
Message-Id: 17e1a1290907161220j340afffdkda7bdcf1d066a372@mail.gmail.com
In Reply to: [gentoo-science] sci-biology/blast-db fails digest verification by "Björn Thorwirth"
1 Hi Bjoern,
2
3 The blast-db package is actually a bit of a problem precisely because
4 of the issue you ran into and I'll probably remove it soon. Instead,
5 you should use the update_blastdb.pl script that comes with ncbi-tools
6 (/usr/share/doc/ncbi-tools*/html/blast/update_blastdb.pl) to download
7 the databases and keep them updated.
8
9 So what I intend to do in a future ncbi-tools release is move this
10 script into /usr/bin and write a tutorial on how to use it, linked
11 from the ncbi-tools elog output.
12
13 Thanks
14
15 -ak
16
17 2009/7/16 Björn Thorwirth <bjoern.thorwirth@×××××××.de>:
18 > Hi!
19 > I just noticed this digest verification error.
20 >
21 > Best regards,
22 >
23 > Bjoern 'Thorwirth
24 > --
25 > Bjoern Thorwirth, Zentrum für Medizinische Biotechnologie,
26 > Universität Duisburg-Essen, Universitätsstr. 2, 45117 Essen, Germany
27 > phone +49 201 183-4026, bjoern.thorwirth@×××××××.de
28 >
29 >
30 >

Replies

Subject Author
Re: [gentoo-science] sci-biology/blast-db fails digest verification "Björn Thorwirth" <bjoern.thorwirth@×××××××.de>