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List Archive: gentoo-science
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To: gentoo-science@g.o
From: Marc Vinyals <marcvinyals@...>
Subject: Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
Date: Sat, 4 Jun 2011 11:08:46 +0200
EL Sat, 4 Jun 2011 12:15:18 +1200
Francois Bissey <fbissey@...> escrigué:

> > Here are my logs. You'll find some warnings in the configuration
> > stage, I hope they'll mean something to you. Also, there's no trace
> > of libclapack.so in
> > ldd /usr/lib64/python2.7/site-packages/scipy/linalg/clapack.so.
> 
> The output of
> ldd /usr/lib64/python2.7/site-packages/scipy/linalg/clapack.so is
> very suspicious with Atlas it should look like this:
> ldd /usr/lib/python2.7/site-packages/scipy/linalg/clapack.so
> linux-gate.so.1 =>  (0xb7890000) liblapack.so.0
> => /usr/lib/liblapack.so.0 (0xb732a000) libpython2.7.so.1.0
> => /usr/lib/libpython2.7.so.1.0 (0xb71bb000) libc.so.6
> => /lib/libc.so.6 (0xb7035000) libblas.so.0
> => /usr/lib/blas/atlas/libblas.so.0 (0xb7014000) libcblas.so.0
> => /usr/lib/blas/atlas/libcblas.so.0 (0xb6ff2000) libatlas.so.0
> => /usr/lib/libatlas.so.0 (0xb6933000) libgfortran.so.3
> => /usr/lib/gcc/i686-pc-linux- gnu/4.5.2/libgfortran.so.3 (0xb6871000)
>         libm.so.6 => /lib/libm.so.6 (0xb684b000)
>         libgcc_s.so.1
> => /usr/lib/gcc/i686-pc-linux-gnu/4.5.2/libgcc_s.so.1 (0xb682d000)
>         libpthread.so.0 => /lib/libpthread.so.0 (0xb6813000)
>         libdl.so.2 => /lib/libdl.so.2 (0xb680f000)
>         libutil.so.1 => /lib/libutil.so.1 (0xb680b000)
>         /lib/ld-linux.so.2 (0xb7891000)
> 
> So nothing from blas/cblas/lapack was linked into your scipy which is
> very worrying. It may be that there is a problem with your current
> blas&co setup. what's the output of
> ls -la /usr/lib64/libcblas.so
> 
> Francois
> 

ls -la /usr/lib64/libcblas.so
lrwxrwxrwx 1 root root 26  2 jun 13:44 /usr/lib64/libcblas.so ->
blas/reference/libcblas.so

ls -la /usr/lib64/libblas.so
lrwxrwxrwx 1 root root 25  2 jun 13:43 /usr/lib64/libblas.so ->
blas/reference/libblas.so

ls -la /usr/lib64/liblapack.so
lrwxrwxrwx 1 root root 29  2 jun 13:47 /usr/lib64/liblapack.so ->
lapack/reference/liblapack.so

It looks reasonable to me.
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Replies:
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Francois Bissey
References:
sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Marc Vinyals
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Francois Bissey
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Marc Vinyals
Re: sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv
-- Francois Bissey
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Updated Jul 05, 2012

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