Hi,
I installed in the last days sage-4.7.1 with the ebuild from
sage-on-gentoo overlay on four systems (all x86_64 AMD and INTEL).
After the installation I run the testsuite:
cd $(mktemp -d) && sage -testall ,
which reported that between 200 and 250 tests failed. The resulting
log files (/home/rose/.sage/tmp/test.log) are between 1.5 and 3.3
MByte. One of these shorter log files is attached.
I got the message that one reason for the downgrade to numpy-1.5.1 is
bug 371099, i.e. missing clapack_* symbols in scipy-0.9.0, if
numpy-1.6.x is used.
My scipy-0.9.0-r1 was installed with numpy-1.6.1. I tried already to
reinstall scipy-0.9.0-r1 (now with numpy-1.5.1), but it fails with:
...
RefactoringTool:
/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/setup.py
/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/__init__.py
/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/matlab/mio4.py
/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/io/matlab/mio5.py
...
/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/ode.py
/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0/build/py3k/scipy/integrate/quadpack.py
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Warning: No configuration returned, assuming
unavailable./usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:527: UserWarning: Specified path is
invalid.
warnings.warn('Specified path %s is invalid.' % d)
libraries atlcblas,f77blas,m,atlas not found in /usr/lib64
NOT AVAILABLE
atlas_blas_info:
libraries atlcblas,f77blas,m,atlas not found in /usr/lib64
NOT AVAILABLE
/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1399:
UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in /usr/local/lib64
libraries blas not found in /usr/local/lib
libraries blas not found in /usr/lib64
libraries blas not found in /usr/lib
NOT AVAILABLE
/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1408:
UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py:1411:
UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "setup.py", line 181, in <module>
setup_package()
File "setup.py", line 173, in setup_package
configuration=configuration )
File "/usr/lib64/python3.2/site-packages/numpy/distutils/core.py",
line 152, in setup
config = configuration()
...
File
"/usr/lib64/python3.2/site-packages/numpy/distutils/system_info.py",
line 461, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
* ERROR: sci-libs/scipy-0.9.0-r1 failed (compile phase):
* Building failed with CPython 3.2 in distutils_building() function
Any hint?
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